Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC4P56524 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC4P56524 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.56■□□□□ 0.88
HDAC4P56524 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.56■□□□□ 0.88
HDAC4P56524 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC4P56524 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC4P56524 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.56■□□□□ 0.88
HDAC4P56524 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
HDAC4P56524 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
HDAC4P56524 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC4P56524 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.56■□□□□ 0.88
HDAC4P56524 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HDAC4P56524 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HDAC4P56524 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
HDAC4P56524 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDAC4P56524 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDAC4P56524 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
HDAC4P56524 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.55■□□□□ 0.88
HDAC4P56524 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDAC4P56524 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDAC4P56524 TREX1-205ENST00000625293 1783 ntBASIC20.55■□□□□ 0.88
HDAC4P56524 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDAC4P56524 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HDAC4P56524 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.55■□□□□ 0.88
HDAC4P56524 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
HDAC4P56524 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HDAC4P56524 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
HDAC4P56524 AP003097.1-201ENST00000530657 1135 ntBASIC20.55■□□□□ 0.88
HDAC4P56524 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HDAC4P56524 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HDAC4P56524 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.55■□□□□ 0.88
HDAC4P56524 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.55■□□□□ 0.88
HDAC4P56524 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDAC4P56524 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.54■□□□□ 0.88
HDAC4P56524 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDAC4P56524 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.54■□□□□ 0.88
HDAC4P56524 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
HDAC4P56524 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDAC4P56524 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDAC4P56524 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.54■□□□□ 0.88
HDAC4P56524 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
HDAC4P56524 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HDAC4P56524 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HDAC4P56524 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HDAC4P56524 POM121L13P-201ENST00000422362 380 ntBASIC20.54■□□□□ 0.88
HDAC4P56524 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.54■□□□□ 0.88
HDAC4P56524 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.54■□□□□ 0.88
HDAC4P56524 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.54■□□□□ 0.88
HDAC4P56524 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HDAC4P56524 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.54■□□□□ 0.88
HDAC4P56524 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.54■□□□□ 0.88
HDAC4P56524 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HDAC4P56524 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HDAC4P56524 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HDAC4P56524 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
HDAC4P56524 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
HDAC4P56524 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HDAC4P56524 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
HDAC4P56524 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
HDAC4P56524 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.54■□□□□ 0.88
HDAC4P56524 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC4P56524 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.53■□□□□ 0.88
HDAC4P56524 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
HDAC4P56524 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.53■□□□□ 0.88
HDAC4P56524 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.53■□□□□ 0.88
HDAC4P56524 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.53■□□□□ 0.88
HDAC4P56524 AC026366.1-201ENST00000488803 879 ntBASIC20.53■□□□□ 0.88
HDAC4P56524 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC4P56524 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC4P56524 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.53■□□□□ 0.88
HDAC4P56524 AL121906.2-201ENST00000621597 723 ntBASIC20.53■□□□□ 0.88
HDAC4P56524 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
HDAC4P56524 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC4P56524 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.53■□□□□ 0.88
HDAC4P56524 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC4P56524 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
HDAC4P56524 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HDAC4P56524 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
HDAC4P56524 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
HDAC4P56524 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC4P56524 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.52■□□□□ 0.88
HDAC4P56524 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
HDAC4P56524 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC4P56524 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.52■□□□□ 0.88
HDAC4P56524 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
HDAC4P56524 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC4P56524 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
HDAC4P56524 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC4P56524 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.52■□□□□ 0.88
HDAC4P56524 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.52■□□□□ 0.88
HDAC4P56524 CD99P1-205ENST00000527459 561 ntBASIC20.52■□□□□ 0.88
HDAC4P56524 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.52■□□□□ 0.88
HDAC4P56524 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.52■□□□□ 0.88
HDAC4P56524 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC4P56524 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC4P56524 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HDAC4P56524 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.52■□□□□ 0.88
HDAC4P56524 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
HDAC4P56524 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
HDAC4P56524 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms