Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
CLTCL1P53675 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CLTCL1P53675 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CLTCL1P53675 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CLTCL1P53675 LGALS8-AS1-201ENST00000487567 1457 ntBASIC28.3■■■□□ 2.12
CLTCL1P53675 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
CLTCL1P53675 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC28.3■■■□□ 2.12
CLTCL1P53675 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC28.3■■■□□ 2.12
CLTCL1P53675 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC28.3■■■□□ 2.12
CLTCL1P53675 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC28.3■■■□□ 2.12
CLTCL1P53675 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC28.3■■■□□ 2.12
CLTCL1P53675 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CLTCL1P53675 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CLTCL1P53675 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
CLTCL1P53675 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CLTCL1P53675 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
CLTCL1P53675 FAM207BP-201ENST00000447172 505 ntBASIC28.29■■■□□ 2.12
CLTCL1P53675 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
CLTCL1P53675 SLC25A1P4-201ENST00000567977 778 ntBASIC28.29■■■□□ 2.12
CLTCL1P53675 NTF6B-201ENST00000591913 560 ntBASIC28.29■■■□□ 2.12
CLTCL1P53675 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC28.29■■■□□ 2.12
CLTCL1P53675 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC28.29■■■□□ 2.12
CLTCL1P53675 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC28.29■■■□□ 2.12
CLTCL1P53675 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC28.29■■■□□ 2.12
CLTCL1P53675 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
CLTCL1P53675 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CLTCL1P53675 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CLTCL1P53675 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC28.29■■■□□ 2.12
CLTCL1P53675 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC28.29■■■□□ 2.12
CLTCL1P53675 MYC-208ENST00000641036 567 ntBASIC28.29■■■□□ 2.12
CLTCL1P53675 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC28.28■■■□□ 2.12
CLTCL1P53675 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC28.28■■■□□ 2.12
CLTCL1P53675 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CLTCL1P53675 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CLTCL1P53675 AC073314.1-201ENST00000568729 2216 ntBASIC28.28■■■□□ 2.12
CLTCL1P53675 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
CLTCL1P53675 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC28.28■■■□□ 2.12
CLTCL1P53675 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CLTCL1P53675 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC28.28■■■□□ 2.12
CLTCL1P53675 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC28.28■■■□□ 2.12
CLTCL1P53675 GLRB-205ENST00000512619 728 ntTSL 3 BASIC28.28■■■□□ 2.12
CLTCL1P53675 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC28.28■■■□□ 2.12
CLTCL1P53675 CBFB-203ENST00000561924 584 ntTSL 5 BASIC28.28■■■□□ 2.12
CLTCL1P53675 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
CLTCL1P53675 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC28.28■■■□□ 2.12
CLTCL1P53675 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC28.27■■■□□ 2.12
CLTCL1P53675 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CLTCL1P53675 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CLTCL1P53675 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CLTCL1P53675 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC28.27■■■□□ 2.12
CLTCL1P53675 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC28.27■■■□□ 2.12
CLTCL1P53675 NT5C-211ENST00000582170 653 ntTSL 3 BASIC28.27■■■□□ 2.12
CLTCL1P53675 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC28.27■■■□□ 2.12
CLTCL1P53675 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC28.27■■■□□ 2.12
CLTCL1P53675 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CLTCL1P53675 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC28.26■■■□□ 2.12
CLTCL1P53675 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CLTCL1P53675 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
CLTCL1P53675 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.11
CLTCL1P53675 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC28.26■■■□□ 2.11
CLTCL1P53675 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CLTCL1P53675 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC28.26■■■□□ 2.11
CLTCL1P53675 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
CLTCL1P53675 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC28.26■■■□□ 2.11
CLTCL1P53675 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
CLTCL1P53675 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC28.26■■■□□ 2.11
CLTCL1P53675 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC28.26■■■□□ 2.11
CLTCL1P53675 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC28.26■■■□□ 2.11
CLTCL1P53675 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
CLTCL1P53675 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CLTCL1P53675 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC28.25■■■□□ 2.11
CLTCL1P53675 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
CLTCL1P53675 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
CLTCL1P53675 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CLTCL1P53675 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC28.25■■■□□ 2.11
CLTCL1P53675 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC28.25■■■□□ 2.11
CLTCL1P53675 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
CLTCL1P53675 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC28.25■■■□□ 2.11
CLTCL1P53675 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
CLTCL1P53675 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CLTCL1P53675 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
CLTCL1P53675 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CLTCL1P53675 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC28.25■■■□□ 2.11
CLTCL1P53675 AC020907.5-201ENST00000624372 1936 ntBASIC28.25■■■□□ 2.11
CLTCL1P53675 AP005212.1-201ENST00000581547 1997 ntBASIC28.25■■■□□ 2.11
CLTCL1P53675 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
CLTCL1P53675 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
CLTCL1P53675 AC128688.1-201ENST00000487626 519 ntBASIC28.25■■■□□ 2.11
CLTCL1P53675 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC28.25■■■□□ 2.11
CLTCL1P53675 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC28.25■■■□□ 2.11
CLTCL1P53675 AL590326.2-201ENST00000625139 305 ntBASIC28.25■■■□□ 2.11
CLTCL1P53675 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
CLTCL1P53675 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC28.24■■■□□ 2.11
CLTCL1P53675 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
CLTCL1P53675 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
CLTCL1P53675 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CLTCL1P53675 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CLTCL1P53675 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CLTCL1P53675 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
CLTCL1P53675 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms