Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
BDNFP23560 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
BDNFP23560 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.77■□□□□ 0.92
BDNFP23560 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
BDNFP23560 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
BDNFP23560 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
BDNFP23560 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
BDNFP23560 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
BDNFP23560 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BDNFP23560 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.77■□□□□ 0.92
BDNFP23560 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
BDNFP23560 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
BDNFP23560 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.77■□□□□ 0.92
BDNFP23560 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
BDNFP23560 AP002982.1-201ENST00000492365 877 ntBASIC20.77■□□□□ 0.92
BDNFP23560 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.77■□□□□ 0.92
BDNFP23560 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
BDNFP23560 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.77■□□□□ 0.92
BDNFP23560 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
BDNFP23560 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
BDNFP23560 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BDNFP23560 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.77■□□□□ 0.92
BDNFP23560 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.77■□□□□ 0.92
BDNFP23560 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BDNFP23560 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
BDNFP23560 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.77■□□□□ 0.92
BDNFP23560 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
BDNFP23560 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.77■□□□□ 0.91
BDNFP23560 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
BDNFP23560 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BDNFP23560 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
BDNFP23560 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.76■□□□□ 0.91
BDNFP23560 AC112907.3-201ENST00000577781 2400 ntBASIC20.76■□□□□ 0.91
BDNFP23560 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
BDNFP23560 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.76■□□□□ 0.91
BDNFP23560 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BDNFP23560 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
BDNFP23560 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
BDNFP23560 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BDNFP23560 FAM197Y1-201ENST00000421178 764 ntBASIC20.76■□□□□ 0.91
BDNFP23560 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.76■□□□□ 0.91
BDNFP23560 TUBB8P6-201ENST00000436895 1288 ntBASIC20.76■□□□□ 0.91
BDNFP23560 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.76■□□□□ 0.91
BDNFP23560 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.76■□□□□ 0.91
BDNFP23560 KRT18P16-201ENST00000510337 1294 ntBASIC20.76■□□□□ 0.91
BDNFP23560 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.76■□□□□ 0.91
BDNFP23560 CD177P1-201ENST00000606252 935 ntBASIC20.76■□□□□ 0.91
BDNFP23560 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.76■□□□□ 0.91
BDNFP23560 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BDNFP23560 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
BDNFP23560 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
BDNFP23560 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
BDNFP23560 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
BDNFP23560 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
BDNFP23560 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BDNFP23560 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BDNFP23560 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BDNFP23560 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
BDNFP23560 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BDNFP23560 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
BDNFP23560 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.75■□□□□ 0.91
BDNFP23560 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BDNFP23560 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.75■□□□□ 0.91
BDNFP23560 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.75■□□□□ 0.91
BDNFP23560 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.75■□□□□ 0.91
BDNFP23560 AC073195.1-201ENST00000607241 877 ntBASIC20.75■□□□□ 0.91
BDNFP23560 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BDNFP23560 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
BDNFP23560 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
BDNFP23560 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
BDNFP23560 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
BDNFP23560 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BDNFP23560 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.75■□□□□ 0.91
BDNFP23560 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BDNFP23560 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.74■□□□□ 0.91
BDNFP23560 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
BDNFP23560 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
BDNFP23560 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
BDNFP23560 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BDNFP23560 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BDNFP23560 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
BDNFP23560 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
BDNFP23560 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
BDNFP23560 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
BDNFP23560 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.74■□□□□ 0.91
BDNFP23560 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.74■□□□□ 0.91
BDNFP23560 C1QL1P1-201ENST00000568105 661 ntBASIC20.74■□□□□ 0.91
BDNFP23560 AL353708.3-201ENST00000610272 989 ntBASIC20.74■□□□□ 0.91
BDNFP23560 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
BDNFP23560 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
BDNFP23560 TMEM179-206ENST00000616017 1645 ntBASIC20.74■□□□□ 0.91
BDNFP23560 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BDNFP23560 KRT17P2-201ENST00000300992 1314 ntBASIC20.74■□□□□ 0.91
BDNFP23560 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
BDNFP23560 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
BDNFP23560 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BDNFP23560 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BDNFP23560 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
BDNFP23560 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BDNFP23560 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms