Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
COL2A1P02458 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC23.1■■□□□ 1.29
COL2A1P02458 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
COL2A1P02458 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC23.09■■□□□ 1.29
COL2A1P02458 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
COL2A1P02458 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC23.09■■□□□ 1.29
COL2A1P02458 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
COL2A1P02458 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
COL2A1P02458 AC091390.4-202ENST00000476426 537 ntBASIC23.09■■□□□ 1.29
COL2A1P02458 AC128688.1-201ENST00000487626 519 ntBASIC23.09■■□□□ 1.29
COL2A1P02458 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC23.09■■□□□ 1.29
COL2A1P02458 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC23.09■■□□□ 1.29
COL2A1P02458 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
COL2A1P02458 AP005212.1-201ENST00000581547 1997 ntBASIC23.09■■□□□ 1.29
COL2A1P02458 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
COL2A1P02458 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC23.08■■□□□ 1.29
COL2A1P02458 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
COL2A1P02458 LGALS8-AS1-201ENST00000487567 1457 ntBASIC23.08■■□□□ 1.29
COL2A1P02458 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
COL2A1P02458 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC23.08■■□□□ 1.29
COL2A1P02458 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
COL2A1P02458 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
COL2A1P02458 CFL2-205ENST00000555765 632 ntTSL 2 BASIC23.08■■□□□ 1.29
COL2A1P02458 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC23.08■■□□□ 1.29
COL2A1P02458 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC23.08■■□□□ 1.29
COL2A1P02458 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC23.08■■□□□ 1.28
COL2A1P02458 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.28
COL2A1P02458 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC23.08■■□□□ 1.28
COL2A1P02458 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC23.08■■□□□ 1.28
COL2A1P02458 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
COL2A1P02458 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
COL2A1P02458 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
COL2A1P02458 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
COL2A1P02458 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
COL2A1P02458 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC23.07■■□□□ 1.28
COL2A1P02458 ECEL1P2-202ENST00000465689 757 ntBASIC23.07■■□□□ 1.28
COL2A1P02458 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC23.07■■□□□ 1.28
COL2A1P02458 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC23.07■■□□□ 1.28
COL2A1P02458 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC23.07■■□□□ 1.28
COL2A1P02458 DET1-207ENST00000564406 2315 ntTSL 2 BASIC23.07■■□□□ 1.28
COL2A1P02458 SLC25A1P4-201ENST00000567977 778 ntBASIC23.07■■□□□ 1.28
COL2A1P02458 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC23.07■■□□□ 1.28
COL2A1P02458 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC23.07■■□□□ 1.28
COL2A1P02458 AL590326.2-201ENST00000625139 305 ntBASIC23.07■■□□□ 1.28
COL2A1P02458 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
COL2A1P02458 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL2A1P02458 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL2A1P02458 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC23.06■■□□□ 1.28
COL2A1P02458 AC006011.2-201ENST00000621313 1158 ntBASIC23.06■■□□□ 1.28
COL2A1P02458 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL2A1P02458 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC23.06■■□□□ 1.28
COL2A1P02458 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
COL2A1P02458 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL2A1P02458 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
COL2A1P02458 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL2A1P02458 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC23.06■■□□□ 1.28
COL2A1P02458 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL2A1P02458 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL2A1P02458 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
COL2A1P02458 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL2A1P02458 DERL1-203ENST00000419562 918 ntTSL 2 BASIC23.05■■□□□ 1.28
COL2A1P02458 DUX4L26-201ENST00000489078 1255 ntBASIC23.05■■□□□ 1.28
COL2A1P02458 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC23.05■■□□□ 1.28
COL2A1P02458 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC23.05■■□□□ 1.28
COL2A1P02458 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
COL2A1P02458 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL2A1P02458 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL2A1P02458 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL2A1P02458 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL2A1P02458 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL2A1P02458 PALM-208ENST00000592155 2272 ntTSL 4 BASIC23.05■■□□□ 1.28
COL2A1P02458 AC009237.14-201ENST00000609975 1594 ntBASIC23.05■■□□□ 1.28
COL2A1P02458 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC23.05■■□□□ 1.28
COL2A1P02458 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL2A1P02458 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
COL2A1P02458 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC23.05■■□□□ 1.28
COL2A1P02458 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL2A1P02458 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL2A1P02458 SLC25A1P2-201ENST00000430693 912 ntBASIC23.05■■□□□ 1.28
COL2A1P02458 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC23.05■■□□□ 1.28
COL2A1P02458 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC23.05■■□□□ 1.28
COL2A1P02458 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC23.05■■□□□ 1.28
COL2A1P02458 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC23.05■■□□□ 1.28
COL2A1P02458 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
COL2A1P02458 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
COL2A1P02458 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC23.04■■□□□ 1.28
COL2A1P02458 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
COL2A1P02458 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
COL2A1P02458 AC073314.1-201ENST00000568729 2216 ntBASIC23.04■■□□□ 1.28
COL2A1P02458 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL2A1P02458 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
COL2A1P02458 INGX-201ENST00000359239 846 ntBASIC23.04■■□□□ 1.28
COL2A1P02458 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
COL2A1P02458 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC23.04■■□□□ 1.28
COL2A1P02458 HMGA1P5-201ENST00000412453 271 ntBASIC23.04■■□□□ 1.28
COL2A1P02458 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC23.04■■□□□ 1.28
COL2A1P02458 AL160286.2-201ENST00000567150 934 ntBASIC23.04■■□□□ 1.28
COL2A1P02458 CYGB-204ENST00000589342 815 ntTSL 3 BASIC23.04■■□□□ 1.28
COL2A1P02458 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC23.04■■□□□ 1.28
COL2A1P02458 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms