Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 AP000692.2-201ENST00000608391 879 ntBASIC25.32■■□□□ 1.64
PTCD1O75127 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PTCD1O75127 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
PTCD1O75127 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC25.32■■□□□ 1.64
PTCD1O75127 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
PTCD1O75127 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PTCD1O75127 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
PTCD1O75127 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
PTCD1O75127 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC25.31■■□□□ 1.64
PTCD1O75127 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
PTCD1O75127 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC25.31■■□□□ 1.64
PTCD1O75127 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
PTCD1O75127 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
PTCD1O75127 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC25.31■■□□□ 1.64
PTCD1O75127 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC25.31■■□□□ 1.64
PTCD1O75127 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC25.31■■□□□ 1.64
PTCD1O75127 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC25.31■■□□□ 1.64
PTCD1O75127 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
PTCD1O75127 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
PTCD1O75127 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTCD1O75127 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTCD1O75127 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTCD1O75127 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC25.3■■□□□ 1.64
PTCD1O75127 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTCD1O75127 GUK1-204ENST00000366721 689 ntTSL 3 BASIC25.3■■□□□ 1.64
PTCD1O75127 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
PTCD1O75127 AC128688.1-201ENST00000487626 519 ntBASIC25.3■■□□□ 1.64
PTCD1O75127 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC25.3■■□□□ 1.64
PTCD1O75127 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC25.3■■□□□ 1.64
PTCD1O75127 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTCD1O75127 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTCD1O75127 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC25.3■■□□□ 1.64
PTCD1O75127 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTCD1O75127 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
PTCD1O75127 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
PTCD1O75127 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PTCD1O75127 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
PTCD1O75127 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC25.29■■□□□ 1.64
PTCD1O75127 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
PTCD1O75127 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PTCD1O75127 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
PTCD1O75127 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC25.29■■□□□ 1.64
PTCD1O75127 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC25.29■■□□□ 1.64
PTCD1O75127 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
PTCD1O75127 CYGB-204ENST00000589342 815 ntTSL 3 BASIC25.29■■□□□ 1.64
PTCD1O75127 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC25.29■■□□□ 1.64
PTCD1O75127 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
PTCD1O75127 AC007375.3-201ENST00000600936 2314 ntBASIC25.29■■□□□ 1.64
PTCD1O75127 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
PTCD1O75127 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
PTCD1O75127 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC25.28■■□□□ 1.64
PTCD1O75127 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC25.28■■□□□ 1.64
PTCD1O75127 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
PTCD1O75127 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
PTCD1O75127 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PTCD1O75127 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PTCD1O75127 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PTCD1O75127 HIST1H2APS4-201ENST00000362070 348 ntBASIC25.28■■□□□ 1.64
PTCD1O75127 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC25.28■■□□□ 1.64
PTCD1O75127 AK4P3-201ENST00000418260 669 ntBASIC25.28■■□□□ 1.64
PTCD1O75127 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC25.28■■□□□ 1.64
PTCD1O75127 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC25.28■■□□□ 1.64
PTCD1O75127 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
PTCD1O75127 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC25.28■■□□□ 1.64
PTCD1O75127 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
PTCD1O75127 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC25.28■■□□□ 1.64
PTCD1O75127 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC25.28■■□□□ 1.64
PTCD1O75127 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC25.27■■□□□ 1.64
PTCD1O75127 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
PTCD1O75127 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC25.27■■□□□ 1.64
PTCD1O75127 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
PTCD1O75127 AC004951.3-201ENST00000418645 1148 ntBASIC25.27■■□□□ 1.64
PTCD1O75127 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC25.27■■□□□ 1.64
PTCD1O75127 LTBR-211ENST00000543190 785 ntTSL 3 BASIC25.27■■□□□ 1.64
PTCD1O75127 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC25.27■■□□□ 1.64
PTCD1O75127 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC25.27■■□□□ 1.64
PTCD1O75127 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
PTCD1O75127 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
PTCD1O75127 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
PTCD1O75127 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
PTCD1O75127 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
PTCD1O75127 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PTCD1O75127 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PTCD1O75127 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC25.26■■□□□ 1.63
PTCD1O75127 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PTCD1O75127 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
PTCD1O75127 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
PTCD1O75127 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC25.26■■□□□ 1.63
PTCD1O75127 MFAP1P1-201ENST00000442257 1255 ntBASIC25.26■■□□□ 1.63
PTCD1O75127 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC25.26■■□□□ 1.63
PTCD1O75127 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC25.26■■□□□ 1.63
PTCD1O75127 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
PTCD1O75127 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC25.26■■□□□ 1.63
PTCD1O75127 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC25.26■■□□□ 1.63
PTCD1O75127 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PTCD1O75127 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
PTCD1O75127 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC25.26■■□□□ 1.63
PTCD1O75127 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC25.26■■□□□ 1.63
PTCD1O75127 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PTCD1O75127 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms