Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 OR7E101P-201ENST00000400428 513 ntBASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 SETP9-201ENST00000423837 832 ntBASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 BX323845.3-201ENST00000428215 527 ntBASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 NANOGP9-201ENST00000439890 892 ntBASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 LINC02210-201ENST00000444561 288 ntBASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 RPSAP37-201ENST00000470913 821 ntBASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 AP002884.1-201ENST00000479691 655 ntBASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 RN7SKP253-201ENST00000516424 309 ntBASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 PMS2P3-207ENST00000529061 717 ntBASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 AC063977.5-201ENST00000601044 974 ntBASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 MIR6780B-201ENST00000610307 79 ntBASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 AP000550.3-201ENST00000637734 379 ntBASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 AC104964.3-201ENST00000606115 2860 ntBASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 AL078595.2-201ENST00000605309 1780 ntBASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS29Q9UBQ0 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 AC140134.1-201ENST00000511830 3544 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 AL137058.3-201ENST00000624531 3099 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 PWAR1-201ENST00000624188 2414 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 AC092681.1-201ENST00000297369 291 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 RNA5SP433-201ENST00000364491 114 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 RPS6P23-201ENST00000413224 722 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 AL022331.1-201ENST00000429025 477 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 AC023271.1-201ENST00000445936 1090 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 AC019084.1-201ENST00000457337 432 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 AC022215.1-201ENST00000481770 362 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 RN7SL170P-201ENST00000487098 295 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 NENFP3-201ENST00000503735 313 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 AC097486.1-201ENST00000515331 210 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 AC122688.1-201ENST00000541494 223 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 AP000619.2-201ENST00000546014 969 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 MIR4311-201ENST00000580794 100 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 RPL12P48-201ENST00000605620 304 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 GTF2IP4-201ENST00000453092 2054 ntBASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
VPS29Q9UBQ0 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 AC068870.1-201ENST00000563737 2455 ntBASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 RN7SKP187-201ENST00000365536 330 ntBASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 RNA5SP30-201ENST00000365552 115 ntBASIC5.4□□□□□ -1.54
VPS29Q9UBQ0 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms