Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC034105.4-201ENST00000568304 277 ntBASIC5.34□□□□□ -1.55
VPS13AQ96RL7 AC060766.1-201ENST00000590824 627 ntBASIC5.34□□□□□ -1.55
VPS13AQ96RL7 MIR6716-201ENST00000613413 80 ntBASIC5.34□□□□□ -1.55
VPS13AQ96RL7 FBXL20-201ENST00000264658 10388 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 BX284613.1-201ENST00000452221 1641 ntBASIC5.34□□□□□ -1.55
VPS13AQ96RL7 MAK-202ENST00000354489 3941 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
VPS13AQ96RL7 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
VPS13AQ96RL7 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC5.34□□□□□ -1.56
VPS13AQ96RL7 AC111000.3-201ENST00000508057 576 ntBASIC5.34□□□□□ -1.56
VPS13AQ96RL7 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.34□□□□□ -1.56
VPS13AQ96RL7 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC5.34□□□□□ -1.56
VPS13AQ96RL7 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC5.34□□□□□ -1.56
VPS13AQ96RL7 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC5.34□□□□□ -1.56
VPS13AQ96RL7 MUC22-201ENST00000561890 6019 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.56
VPS13AQ96RL7 DOCK8-209ENST00000469391 6386 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
VPS13AQ96RL7 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.34□□□□□ -1.56
VPS13AQ96RL7 VCAN-208ENST00000512590 5923 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
VPS13AQ96RL7 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 SAR1A-205ENST00000373242 5981 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 ZMYND8-207ENST00000396281 5511 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 RN7SKP149-201ENST00000363008 344 ntBASIC5.33□□□□□ -1.56
VPS13AQ96RL7 DNAJC19P7-201ENST00000428811 344 ntBASIC5.33□□□□□ -1.56
VPS13AQ96RL7 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 AL590399.4-201ENST00000436561 601 ntBASIC5.33□□□□□ -1.56
VPS13AQ96RL7 RPL34P20-201ENST00000442771 351 ntBASIC5.33□□□□□ -1.56
VPS13AQ96RL7 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 CBFA2T2-206ENST00000397800 7449 ntTSL 5 BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 EIF3KP3-201ENST00000514461 639 ntBASIC5.33□□□□□ -1.56
VPS13AQ96RL7 RN7SKP92-201ENST00000517266 244 ntBASIC5.33□□□□□ -1.56
VPS13AQ96RL7 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 AL512428.1-201ENST00000562221 654 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 AC007494.1-201ENST00000562293 760 ntBASIC5.33□□□□□ -1.56
VPS13AQ96RL7 AC069366.1-201ENST00000583159 838 ntBASIC5.33□□□□□ -1.56
VPS13AQ96RL7 AC125494.2-201ENST00000602431 657 ntBASIC5.33□□□□□ -1.56
VPS13AQ96RL7 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 AC003973.3-201ENST00000624863 2822 ntBASIC5.33□□□□□ -1.56
VPS13AQ96RL7 AL391261.1-201ENST00000555712 1479 ntBASIC5.33□□□□□ -1.56
VPS13AQ96RL7 VLDLR-203ENST00000382100 9163 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 EEA1-201ENST00000322349 9875 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 KCNMB3P1-202ENST00000493696 3389 ntBASIC5.33□□□□□ -1.56
VPS13AQ96RL7 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VPS13AQ96RL7 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 RNA5SP113-201ENST00000410486 84 ntBASIC5.32□□□□□ -1.56
VPS13AQ96RL7 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 RPS4XP20-201ENST00000505751 772 ntBASIC5.32□□□□□ -1.56
VPS13AQ96RL7 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 AC034229.2-201ENST00000566945 2508 ntBASIC5.32□□□□□ -1.56
VPS13AQ96RL7 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 UGT2B27P-201ENST00000505092 1620 ntBASIC5.32□□□□□ -1.56
VPS13AQ96RL7 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 RNA5SP455-201ENST00000365190 119 ntBASIC5.32□□□□□ -1.56
VPS13AQ96RL7 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 AC112498.1-201ENST00000444401 332 ntBASIC5.32□□□□□ -1.56
VPS13AQ96RL7 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 PPM1AP1-201ENST00000502740 1135 ntBASIC5.32□□□□□ -1.56
VPS13AQ96RL7 RN7SKP122-201ENST00000515923 296 ntBASIC5.32□□□□□ -1.56
VPS13AQ96RL7 EDDM3DP-201ENST00000554692 434 ntBASIC5.32□□□□□ -1.56
VPS13AQ96RL7 AC099654.6-201ENST00000636487 512 ntBASIC5.32□□□□□ -1.56
VPS13AQ96RL7 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 SPTAN1-202ENST00000372731 7889 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 GSTCD-201ENST00000360505 2154 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 AL078621.3-201ENST00000623707 2042 ntBASIC5.32□□□□□ -1.56
VPS13AQ96RL7 NAV1-202ENST00000367296 13091 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 KCNMA1-248ENST00000638991 11990 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 MYH4-201ENST00000255381 6016 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 RNA5SP387-201ENST00000364226 106 ntBASIC5.32□□□□□ -1.56
VPS13AQ96RL7 RN7SKP263-201ENST00000411194 309 ntBASIC5.32□□□□□ -1.56
VPS13AQ96RL7 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS13AQ96RL7 RPS23P2-201ENST00000463671 415 ntBASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms