Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 MFSD8-216ENST00000641147 4009 ntBASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 MFSD8-219ENST00000641228 2559 ntBASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 AC009804.1-201ENST00000400949 179 ntBASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 RPL23AP18-201ENST00000416139 468 ntBASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 TRBV5-2-201ENST00000489095 273 ntBASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 AC105233.1-201ENST00000498840 781 ntBASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 SNRPCP2-201ENST00000504370 475 ntBASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 AC105384.2-201ENST00000508433 640 ntBASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 AC069307.1-201ENST00000602820 447 ntBASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 MIR6758-201ENST00000620653 63 ntBASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 OLMALINC-203ENST00000641087 3779 ntBASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 AL360081.1-201ENST00000428299 555 ntBASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 OR6D1P-201ENST00000436165 939 ntBASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 TPT1P12-201ENST00000448968 492 ntBASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 AL163952.1-202ENST00000569625 600 ntBASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 FAM25E-202ENST00000608562 189 ntBASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 AC079414.3-201ENST00000612986 1090 ntBASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 PAIP2B-201ENST00000244221 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 RNU4-4P-201ENST00000364588 130 ntBASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 RMRPP5-201ENST00000411156 267 ntBASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 AC079841.1-201ENST00000481228 950 ntBASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 AC090142.2-201ENST00000483263 416 ntBASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 AC139697.1-201ENST00000548429 745 ntBASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 SAMMSON-209ENST00000641222 1100 ntBASIC6.94□□□□□ -1.3
CCDC88AQ3V6T2 AC107980.1-201ENST00000558671 3355 ntBASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 AC005225.5-201ENST00000623547 2225 ntBASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 HSPD1P8-201ENST00000400121 1658 ntBASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 MIR765-201ENST00000390226 114 ntBASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 RPL7P56-201ENST00000429441 717 ntBASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 AL731534.1-201ENST00000434711 269 ntBASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 AC090638.1-201ENST00000498296 909 ntBASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 NMNAT1P5-201ENST00000559657 841 ntBASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 AC008745.1-201ENST00000604064 271 ntBASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
CCDC88AQ3V6T2 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms