Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC6.29□□□□□ -1.4
USP41Q3LFD5 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
USP41Q3LFD5 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
USP41Q3LFD5 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC6.29□□□□□ -1.4
USP41Q3LFD5 NPM1P45-201ENST00000583151 559 ntBASIC6.29□□□□□ -1.4
USP41Q3LFD5 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC6.29□□□□□ -1.4
USP41Q3LFD5 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.29□□□□□ -1.4
USP41Q3LFD5 AC104695.2-201ENST00000605056 775 ntBASIC6.29□□□□□ -1.4
USP41Q3LFD5 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC6.29□□□□□ -1.4
USP41Q3LFD5 MTCO1P1-201ENST00000624263 1081 ntBASIC6.29□□□□□ -1.4
USP41Q3LFD5 CFTRP2-201ENST00000634304 199 ntBASIC6.29□□□□□ -1.4
USP41Q3LFD5 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
USP41Q3LFD5 ATM-229ENST00000639953 587 ntTSL 5 BASIC6.29□□□□□ -1.4
USP41Q3LFD5 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.29□□□□□ -1.4
USP41Q3LFD5 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
USP41Q3LFD5 AL022323.4-201ENST00000623980 13120 ntBASIC6.29□□□□□ -1.4
USP41Q3LFD5 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
USP41Q3LFD5 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
USP41Q3LFD5 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
USP41Q3LFD5 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP41Q3LFD5 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP41Q3LFD5 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP41Q3LFD5 RNA5SP211-201ENST00000365516 117 ntBASIC6.28□□□□□ -1.4
USP41Q3LFD5 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP41Q3LFD5 SNORA11B-201ENST00000408175 129 ntBASIC6.28□□□□□ -1.4
USP41Q3LFD5 RN7SKP29-201ENST00000410957 272 ntBASIC6.28□□□□□ -1.4
USP41Q3LFD5 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 BMS1P17-202ENST00000416720 316 ntBASIC6.28□□□□□ -1.4
USP41Q3LFD5 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
USP41Q3LFD5 NME1P1-201ENST00000420914 382 ntBASIC6.28□□□□□ -1.4
USP41Q3LFD5 GAPDHP48-201ENST00000436626 961 ntBASIC6.28□□□□□ -1.4
USP41Q3LFD5 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 NPM1P19-201ENST00000450070 712 ntBASIC6.28□□□□□ -1.4
USP41Q3LFD5 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 RN7SL466P-201ENST00000497546 295 ntBASIC6.28□□□□□ -1.4
USP41Q3LFD5 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 IGBP1P1-201ENST00000554337 1009 ntBASIC6.28□□□□□ -1.4
USP41Q3LFD5 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 AC007494.1-201ENST00000562293 760 ntBASIC6.28□□□□□ -1.4
USP41Q3LFD5 MIR4260-201ENST00000583107 67 ntBASIC6.28□□□□□ -1.4
USP41Q3LFD5 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 AC093388.1-201ENST00000609166 430 ntBASIC6.28□□□□□ -1.4
USP41Q3LFD5 AC016911.1-201ENST00000613297 452 ntBASIC6.28□□□□□ -1.4
USP41Q3LFD5 AC005899.7-201ENST00000618199 588 ntBASIC6.28□□□□□ -1.4
USP41Q3LFD5 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP41Q3LFD5 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
USP41Q3LFD5 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP41Q3LFD5 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
USP41Q3LFD5 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC6.28□□□□□ -1.4
USP41Q3LFD5 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
USP41Q3LFD5 ZNF101P1-201ENST00000435701 1720 ntBASIC6.28□□□□□ -1.4
USP41Q3LFD5 AL049634.1-201ENST00000453770 1720 ntBASIC6.28□□□□□ -1.4
USP41Q3LFD5 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
USP41Q3LFD5 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
USP41Q3LFD5 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
USP41Q3LFD5 CR788268.1-201ENST00000603931 1809 ntBASIC6.27□□□□□ -1.41
USP41Q3LFD5 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
USP41Q3LFD5 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
USP41Q3LFD5 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
USP41Q3LFD5 AC079753.1-201ENST00000623243 3868 ntBASIC6.27□□□□□ -1.41
USP41Q3LFD5 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
USP41Q3LFD5 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
USP41Q3LFD5 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
USP41Q3LFD5 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
USP41Q3LFD5 AL391361.1-201ENST00000405580 489 ntBASIC6.27□□□□□ -1.41
USP41Q3LFD5 RN7SKP151-201ENST00000410230 316 ntBASIC6.27□□□□□ -1.41
USP41Q3LFD5 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC6.27□□□□□ -1.41
USP41Q3LFD5 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC6.27□□□□□ -1.41
USP41Q3LFD5 DEFA9P-201ENST00000433042 285 ntBASIC6.27□□□□□ -1.41
USP41Q3LFD5 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC6.27□□□□□ -1.41
USP41Q3LFD5 AC073909.1-201ENST00000447112 999 ntBASIC6.27□□□□□ -1.41
USP41Q3LFD5 REG1CP-206ENST00000447469 496 ntBASIC6.27□□□□□ -1.41
USP41Q3LFD5 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
USP41Q3LFD5 AC093166.4-201ENST00000457867 318 ntBASIC6.27□□□□□ -1.41
USP41Q3LFD5 AC022215.1-201ENST00000481770 362 ntBASIC6.27□□□□□ -1.41
USP41Q3LFD5 RN7SL629P-201ENST00000489622 285 ntBASIC6.27□□□□□ -1.41
USP41Q3LFD5 AGGF1P3-201ENST00000493675 1213 ntBASIC6.27□□□□□ -1.41
USP41Q3LFD5 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC6.27□□□□□ -1.41
USP41Q3LFD5 CYP4F27P-201ENST00000514557 494 ntBASIC6.27□□□□□ -1.41
USP41Q3LFD5 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC6.27□□□□□ -1.41
USP41Q3LFD5 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC6.27□□□□□ -1.41
USP41Q3LFD5 TXNP4-201ENST00000575018 310 ntBASIC6.27□□□□□ -1.41
USP41Q3LFD5 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms