Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC4.22□□□□□ -1.73
FOXA3P55318 AC130366.1-201ENST00000526505 1192 ntBASIC4.22□□□□□ -1.73
FOXA3P55318 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC4.22□□□□□ -1.73
FOXA3P55318 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC4.22□□□□□ -1.73
FOXA3P55318 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC4.22□□□□□ -1.73
FOXA3P55318 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.22□□□□□ -1.73
FOXA3P55318 AC091078.2-201ENST00000557145 559 ntBASIC4.22□□□□□ -1.73
FOXA3P55318 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC4.22□□□□□ -1.73
FOXA3P55318 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC4.22□□□□□ -1.73
FOXA3P55318 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC4.22□□□□□ -1.73
FOXA3P55318 IGKV2OR2-1-201ENST00000605129 304 ntBASIC4.22□□□□□ -1.73
FOXA3P55318 AC068726.1-201ENST00000610993 341 ntBASIC4.22□□□□□ -1.73
FOXA3P55318 AL139099.4-201ENST00000614802 114 ntBASIC4.22□□□□□ -1.73
FOXA3P55318 AC018558.4-201ENST00000622153 281 ntBASIC4.22□□□□□ -1.73
FOXA3P55318 AC091932.2-201ENST00000623014 291 ntBASIC4.22□□□□□ -1.73
FOXA3P55318 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC4.22□□□□□ -1.73
FOXA3P55318 AC103703.1-201ENST00000634783 663 ntBASIC4.22□□□□□ -1.73
FOXA3P55318 OR10R2-202ENST00000641067 1132 ntAPPRIS ALT2 BASIC4.22□□□□□ -1.73
FOXA3P55318 OR10R2-203ENST00000641400 975 ntAPPRIS ALT2 BASIC4.22□□□□□ -1.73
FOXA3P55318 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA3P55318 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.22□□□□□ -1.73
FOXA3P55318 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA3P55318 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA3P55318 CASC19-248ENST00000641674 1356 ntBASIC4.22□□□□□ -1.73
FOXA3P55318 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA3P55318 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA3P55318 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA3P55318 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.22□□□□□ -1.73
FOXA3P55318 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA3P55318 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA3P55318 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA3P55318 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA3P55318 ATP5A1P1-201ENST00000454088 1321 ntBASIC4.21□□□□□ -1.73
FOXA3P55318 AC022417.1-201ENST00000624768 1303 ntBASIC4.21□□□□□ -1.73
FOXA3P55318 LYARP1-201ENST00000436977 1501 ntBASIC4.21□□□□□ -1.73
FOXA3P55318 SAMMSON-213ENST00000641336 1521 ntBASIC4.21□□□□□ -1.73
FOXA3P55318 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
FOXA3P55318 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
FOXA3P55318 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.21□□□□□ -1.74
FOXA3P55318 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
FOXA3P55318 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
FOXA3P55318 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.21□□□□□ -1.74
FOXA3P55318 RNA5SP326-201ENST00000363209 110 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 YWHAZP4-201ENST00000392459 708 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 AL132875.1-201ENST00000403623 949 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC4.21□□□□□ -1.74
FOXA3P55318 AL139135.1-201ENST00000412675 209 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC4.21□□□□□ -1.74
FOXA3P55318 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC4.21□□□□□ -1.74
FOXA3P55318 TBX18-AS1-201ENST00000423086 421 ntTSL 3 BASIC4.21□□□□□ -1.74
FOXA3P55318 AP003385.1-201ENST00000426387 893 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC4.21□□□□□ -1.74
FOXA3P55318 NDUFB3-202ENST00000433898 503 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
FOXA3P55318 PSMD8P1-201ENST00000436275 769 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 NANOGP9-201ENST00000439890 892 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.21□□□□□ -1.74
FOXA3P55318 AL645936.1-201ENST00000441979 518 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 FTLP8-201ENST00000446770 267 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 AC009244.1-201ENST00000450566 258 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 AC002553.3-201ENST00000453002 341 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 RPS23P2-201ENST00000463671 415 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 RPL5P33-201ENST00000487833 905 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.21□□□□□ -1.74
FOXA3P55318 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC4.21□□□□□ -1.74
FOXA3P55318 AC021106.1-201ENST00000509020 1058 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 RNU6-513P-201ENST00000516104 104 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 AC022973.2-201ENST00000520146 549 ntTSL 4 BASIC4.21□□□□□ -1.74
FOXA3P55318 AC007991.4-201ENST00000522970 605 ntTSL 3 BASIC4.21□□□□□ -1.74
FOXA3P55318 AP001994.1-201ENST00000527539 826 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC4.21□□□□□ -1.74
FOXA3P55318 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.21□□□□□ -1.74
FOXA3P55318 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC4.21□□□□□ -1.74
FOXA3P55318 LRTOMT-217ENST00000539587 428 ntTSL 2 BASIC4.21□□□□□ -1.74
FOXA3P55318 AC025419.1-203ENST00000540652 726 ntTSL 3 BASIC4.21□□□□□ -1.74
FOXA3P55318 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC4.21□□□□□ -1.74
FOXA3P55318 CHEK2P2-201ENST00000554701 672 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC4.21□□□□□ -1.74
FOXA3P55318 AGGF1P7-201ENST00000562369 913 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 MTCYBP13-201ENST00000578634 1093 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 RN7SL290P-201ENST00000578661 300 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 RN7SL32P-201ENST00000580514 281 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 MIR4732-201ENST00000581873 76 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 AC083964.1-201ENST00000607549 630 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 AL365181.4-201ENST00000609800 547 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC4.21□□□□□ -1.74
FOXA3P55318 MIR6726-201ENST00000613751 61 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 AC024884.1-201ENST00000620583 399 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC4.21□□□□□ -1.74
FOXA3P55318 OR11H2-202ENST00000641517 1085 ntBASIC4.21□□□□□ -1.74
FOXA3P55318 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC4.21□□□□□ -1.74
FOXA3P55318 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
FOXA3P55318 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC4.21□□□□□ -1.74
FOXA3P55318 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
FOXA3P55318 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC4.21□□□□□ -1.74
FOXA3P55318 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
FOXA3P55318 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
FOXA3P55318 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
FOXA3P55318 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.74
FOXA3P55318 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.74
FOXA3P55318 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms