Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
CUX1P39880 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
CUX1P39880 RNA5-8SP5-201ENST00000365304 152 ntBASIC9.25□□□□□ -0.93
CUX1P39880 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC9.25□□□□□ -0.93
CUX1P39880 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC9.25□□□□□ -0.93
CUX1P39880 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC9.25□□□□□ -0.93
CUX1P39880 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC9.25□□□□□ -0.93
CUX1P39880 TRY2P-201ENST00000448860 689 ntBASIC9.25□□□□□ -0.93
CUX1P39880 AC092324.1-201ENST00000468671 324 ntBASIC9.25□□□□□ -0.93
CUX1P39880 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC9.25□□□□□ -0.93
CUX1P39880 AC096754.1-201ENST00000508904 818 ntBASIC9.25□□□□□ -0.93
CUX1P39880 RN7SKP98-201ENST00000517070 156 ntBASIC9.25□□□□□ -0.93
CUX1P39880 AC078899.1-201ENST00000521432 1185 ntBASIC9.25□□□□□ -0.93
CUX1P39880 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC9.25□□□□□ -0.93
CUX1P39880 NOP10-202ENST00000557912 436 ntTSL 2 BASIC9.25□□□□□ -0.93
CUX1P39880 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC9.25□□□□□ -0.93
CUX1P39880 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
CUX1P39880 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
CUX1P39880 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
CUX1P39880 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC9.24□□□□□ -0.93
CUX1P39880 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
CUX1P39880 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
CUX1P39880 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
CUX1P39880 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
CUX1P39880 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
CUX1P39880 MRRF-207ENST00000373729 870 ntTSL 3 BASIC9.24□□□□□ -0.93
CUX1P39880 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC9.24□□□□□ -0.93
CUX1P39880 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC9.24□□□□□ -0.93
CUX1P39880 RN7SKP126-201ENST00000411143 300 ntBASIC9.24□□□□□ -0.93
CUX1P39880 AC073410.1-201ENST00000435125 589 ntBASIC9.24□□□□□ -0.93
CUX1P39880 AL772161.1-201ENST00000439130 476 ntBASIC9.24□□□□□ -0.93
CUX1P39880 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC9.24□□□□□ -0.93
CUX1P39880 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC9.24□□□□□ -0.93
CUX1P39880 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC9.24□□□□□ -0.93
CUX1P39880 AL163952.1-202ENST00000569625 600 ntBASIC9.24□□□□□ -0.93
CUX1P39880 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC9.24□□□□□ -0.93
CUX1P39880 AC095055.1-201ENST00000603472 1113 ntBASIC9.24□□□□□ -0.93
CUX1P39880 BTBD10-210ENST00000530907 1871 ntAPPRIS ALT1 TSL 2 BASIC9.24□□□□□ -0.93
CUX1P39880 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC9.24□□□□□ -0.93
CUX1P39880 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC9.24□□□□□ -0.93
CUX1P39880 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC9.24□□□□□ -0.93
CUX1P39880 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
CUX1P39880 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC9.23□□□□□ -0.93
CUX1P39880 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
CUX1P39880 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC9.23□□□□□ -0.93
CUX1P39880 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
CUX1P39880 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC9.23□□□□□ -0.93
CUX1P39880 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
CUX1P39880 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC9.23□□□□□ -0.93
CUX1P39880 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC9.23□□□□□ -0.93
CUX1P39880 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC9.23□□□□□ -0.93
CUX1P39880 KIAA1217-202ENST00000376451 7383 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
CUX1P39880 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC9.23□□□□□ -0.93
CUX1P39880 AC068138.1-201ENST00000412635 217 ntBASIC9.23□□□□□ -0.93
CUX1P39880 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC9.23□□□□□ -0.93
CUX1P39880 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC9.23□□□□□ -0.93
CUX1P39880 NANOGP9-201ENST00000439890 892 ntBASIC9.23□□□□□ -0.93
CUX1P39880 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC9.23□□□□□ -0.93
CUX1P39880 RN7SKP253-201ENST00000516424 309 ntBASIC9.23□□□□□ -0.93
CUX1P39880 AC092490.3-201ENST00000545370 572 ntBASIC9.23□□□□□ -0.93
CUX1P39880 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC9.23□□□□□ -0.93
CUX1P39880 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC9.23□□□□□ -0.93
CUX1P39880 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC9.23□□□□□ -0.93
CUX1P39880 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.93
CUX1P39880 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC9.23□□□□□ -0.93
CUX1P39880 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC9.23□□□□□ -0.93
CUX1P39880 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC9.23□□□□□ -0.93
CUX1P39880 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC9.23□□□□□ -0.93
CUX1P39880 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC9.23□□□□□ -0.93
CUX1P39880 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC9.23□□□□□ -0.93
CUX1P39880 KIF1B-203ENST00000377083 5885 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
CUX1P39880 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CUX1P39880 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC9.22□□□□□ -0.93
CUX1P39880 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CUX1P39880 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC9.22□□□□□ -0.93
CUX1P39880 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC9.22□□□□□ -0.93
CUX1P39880 GSTM5P1-201ENST00000434751 660 ntBASIC9.22□□□□□ -0.93
CUX1P39880 GAPDHP25-201ENST00000447061 1001 ntBASIC9.22□□□□□ -0.93
CUX1P39880 RPS29P33-201ENST00000456717 146 ntBASIC9.22□□□□□ -0.93
CUX1P39880 AC090142.2-201ENST00000483263 416 ntBASIC9.22□□□□□ -0.93
CUX1P39880 RPS17P5-201ENST00000498293 408 ntBASIC9.22□□□□□ -0.93
CUX1P39880 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
CUX1P39880 MTND6P2-201ENST00000512226 524 ntBASIC9.22□□□□□ -0.93
CUX1P39880 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC9.22□□□□□ -0.93
CUX1P39880 AP000769.2-201ENST00000602344 396 ntBASIC9.22□□□□□ -0.93
CUX1P39880 NANOGP3-201ENST00000605855 286 ntBASIC9.22□□□□□ -0.93
CUX1P39880 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC9.22□□□□□ -0.93
CUX1P39880 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC9.22□□□□□ -0.93
CUX1P39880 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CUX1P39880 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC9.22□□□□□ -0.93
CUX1P39880 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
CUX1P39880 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC9.22□□□□□ -0.93
CUX1P39880 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CUX1P39880 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC9.22□□□□□ -0.93
CUX1P39880 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
CUX1P39880 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC9.22□□□□□ -0.93
CUX1P39880 AL589993.1-201ENST00000407450 2524 ntBASIC9.22□□□□□ -0.93
CUX1P39880 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.93
CUX1P39880 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC9.21□□□□□ -0.93
CUX1P39880 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC9.21□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms