Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC7.21□□□□□ -1.25
COL18A1P39060 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC7.21□□□□□ -1.25
COL18A1P39060 AC093655.2-201ENST00000425735 631 ntBASIC7.21□□□□□ -1.25
COL18A1P39060 EIF2S2P3-201ENST00000428356 999 ntBASIC7.21□□□□□ -1.25
COL18A1P39060 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
COL18A1P39060 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC7.21□□□□□ -1.25
COL18A1P39060 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC7.21□□□□□ -1.25
COL18A1P39060 DUBR-205ENST00000495228 411 ntTSL 2 BASIC7.21□□□□□ -1.25
COL18A1P39060 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC7.21□□□□□ -1.25
COL18A1P39060 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC7.21□□□□□ -1.25
COL18A1P39060 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC7.21□□□□□ -1.25
COL18A1P39060 AL022394.1-201ENST00000606979 292 ntBASIC7.21□□□□□ -1.25
COL18A1P39060 AC105105.5-201ENST00000622635 1294 ntBASIC7.21□□□□□ -1.25
COL18A1P39060 AC112694.2-201ENST00000623697 768 ntBASIC7.21□□□□□ -1.25
COL18A1P39060 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL18A1P39060 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
COL18A1P39060 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC7.21□□□□□ -1.26
COL18A1P39060 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC7.21□□□□□ -1.26
COL18A1P39060 AC013268.3-201ENST00000262716 2324 ntBASIC7.21□□□□□ -1.26
COL18A1P39060 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL18A1P39060 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.26
COL18A1P39060 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC7.21□□□□□ -1.26
COL18A1P39060 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC7.21□□□□□ -1.26
COL18A1P39060 AC009962.1-201ENST00000567327 3813 ntBASIC7.21□□□□□ -1.26
COL18A1P39060 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC7.21□□□□□ -1.26
COL18A1P39060 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL18A1P39060 SNORD1C-201ENST00000363315 78 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 SNORA70H-201ENST00000383910 135 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 SNORA70J-201ENST00000384182 135 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC7.2□□□□□ -1.26
COL18A1P39060 AC097484.1-201ENST00000471148 389 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC7.2□□□□□ -1.26
COL18A1P39060 AC004980.4-201ENST00000513375 203 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 EIF3KP3-201ENST00000514461 639 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC7.2□□□□□ -1.26
COL18A1P39060 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC7.2□□□□□ -1.26
COL18A1P39060 MIR4691-201ENST00000583764 85 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 AC093799.2-201ENST00000610062 578 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC7.2□□□□□ -1.26
COL18A1P39060 AL078621.3-201ENST00000623707 2042 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL18A1P39060 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL18A1P39060 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL18A1P39060 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC7.2□□□□□ -1.26
COL18A1P39060 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC7.2□□□□□ -1.26
COL18A1P39060 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL18A1P39060 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC7.2□□□□□ -1.26
COL18A1P39060 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL18A1P39060 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC7.2□□□□□ -1.26
COL18A1P39060 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL18A1P39060 ALMS1-204ENST00000484298 12595 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL18A1P39060 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC7.2□□□□□ -1.26
COL18A1P39060 AC092647.3-201ENST00000443044 633 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC7.2□□□□□ -1.26
COL18A1P39060 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC7.2□□□□□ -1.26
COL18A1P39060 RN7SL459P-201ENST00000481078 302 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 AC058823.1-201ENST00000485315 474 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC7.2□□□□□ -1.26
COL18A1P39060 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC7.2□□□□□ -1.26
COL18A1P39060 AC092490.3-201ENST00000545370 572 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC7.2□□□□□ -1.26
COL18A1P39060 MIR4697-201ENST00000582977 78 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 AC060766.1-201ENST00000590824 627 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 AL683813.2-201ENST00000605245 502 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 AL133481.2-203ENST00000607558 139 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 AC091905.4-201ENST00000623432 202 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 MTCO1P1-201ENST00000624263 1081 ntBASIC7.2□□□□□ -1.26
COL18A1P39060 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC7.2□□□□□ -1.26
COL18A1P39060 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC7.2□□□□□ -1.26
COL18A1P39060 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC7.2□□□□□ -1.26
COL18A1P39060 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC7.2□□□□□ -1.26
COL18A1P39060 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC7.2□□□□□ -1.26
COL18A1P39060 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC7.2□□□□□ -1.26
COL18A1P39060 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
COL18A1P39060 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC7.2□□□□□ -1.26
COL18A1P39060 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC7.2□□□□□ -1.26
COL18A1P39060 MYCBP2-201ENST00000357337 14736 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
COL18A1P39060 DPY19L3-205ENST00000586987 5925 ntTSL 5 BASIC7.2□□□□□ -1.26
COL18A1P39060 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
COL18A1P39060 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
COL18A1P39060 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
COL18A1P39060 RNA5SP123-201ENST00000363244 119 ntBASIC7.19□□□□□ -1.26
COL18A1P39060 SNORA51.8-201ENST00000384234 132 ntBASIC7.19□□□□□ -1.26
COL18A1P39060 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
COL18A1P39060 RPS17P17-201ENST00000419392 409 ntBASIC7.19□□□□□ -1.26
COL18A1P39060 AL365220.1-201ENST00000432923 399 ntBASIC7.19□□□□□ -1.26
COL18A1P39060 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC7.19□□□□□ -1.26
COL18A1P39060 AC090142.2-201ENST00000483263 416 ntBASIC7.19□□□□□ -1.26
COL18A1P39060 AC008897.1-201ENST00000494006 347 ntBASIC7.19□□□□□ -1.26
COL18A1P39060 CEACAMP10-202ENST00000495431 496 ntBASIC7.19□□□□□ -1.26
COL18A1P39060 SCARNA16.4-201ENST00000516956 187 ntBASIC7.19□□□□□ -1.26
COL18A1P39060 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC7.19□□□□□ -1.26
COL18A1P39060 RN7SL356P-201ENST00000582228 248 ntBASIC7.19□□□□□ -1.26
COL18A1P39060 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC7.19□□□□□ -1.26
COL18A1P39060 AC008745.1-201ENST00000604064 271 ntBASIC7.19□□□□□ -1.26
COL18A1P39060 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC7.19□□□□□ -1.26
COL18A1P39060 AC131649.2-201ENST00000624925 4439 ntBASIC7.19□□□□□ -1.26
COL18A1P39060 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC7.19□□□□□ -1.26
COL18A1P39060 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
COL18A1P39060 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC7.19□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms