Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
BRCA1P38398 HYAL4-201ENST00000223026 2407 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
BRCA1P38398 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.74□□□□□ -1.33
BRCA1P38398 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
BRCA1P38398 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
BRCA1P38398 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
BRCA1P38398 BTBD10-210ENST00000530907 1871 ntAPPRIS ALT1 TSL 2 BASIC6.74□□□□□ -1.33
BRCA1P38398 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
BRCA1P38398 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC6.74□□□□□ -1.33
BRCA1P38398 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC6.74□□□□□ -1.33
BRCA1P38398 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
BRCA1P38398 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
BRCA1P38398 IRF5P1-201ENST00000504852 2164 ntBASIC6.74□□□□□ -1.33
BRCA1P38398 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
BRCA1P38398 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC6.74□□□□□ -1.33
BRCA1P38398 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
BRCA1P38398 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
BRCA1P38398 EI24P4-201ENST00000423683 1078 ntBASIC6.74□□□□□ -1.33
BRCA1P38398 ZDHHC20P1-204ENST00000435787 423 ntBASIC6.74□□□□□ -1.33
BRCA1P38398 RPL31P44-201ENST00000447680 377 ntBASIC6.74□□□□□ -1.33
BRCA1P38398 PDCL3P4-201ENST00000489621 720 ntBASIC6.74□□□□□ -1.33
BRCA1P38398 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC6.74□□□□□ -1.33
BRCA1P38398 C14orf166-201ENST00000261700 7075 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
BRCA1P38398 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC6.74□□□□□ -1.33
BRCA1P38398 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
BRCA1P38398 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC6.74□□□□□ -1.33
BRCA1P38398 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC6.74□□□□□ -1.33
BRCA1P38398 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC6.74□□□□□ -1.33
BRCA1P38398 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC6.74□□□□□ -1.33
BRCA1P38398 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
BRCA1P38398 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
BRCA1P38398 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
BRCA1P38398 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC6.74□□□□□ -1.33
BRCA1P38398 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC6.74□□□□□ -1.33
BRCA1P38398 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
BRCA1P38398 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
BRCA1P38398 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
BRCA1P38398 GABRB3-216ENST00000628124 5581 ntTSL 2 BASIC6.74□□□□□ -1.33
BRCA1P38398 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
BRCA1P38398 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
BRCA1P38398 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
BRCA1P38398 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
BRCA1P38398 SCUBE3-201ENST00000274938 7356 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
BRCA1P38398 RNU1-146P-201ENST00000364015 165 ntBASIC6.73□□□□□ -1.33
BRCA1P38398 AL353625.1-202ENST00000366273 571 ntBASIC6.73□□□□□ -1.33
BRCA1P38398 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC6.73□□□□□ -1.33
BRCA1P38398 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC6.73□□□□□ -1.33
BRCA1P38398 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC6.73□□□□□ -1.33
BRCA1P38398 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC6.73□□□□□ -1.33
BRCA1P38398 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC6.73□□□□□ -1.33
BRCA1P38398 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC6.73□□□□□ -1.33
BRCA1P38398 AC091193.1-201ENST00000604640 448 ntBASIC6.73□□□□□ -1.33
BRCA1P38398 AC024589.2-201ENST00000605642 1294 ntBASIC6.73□□□□□ -1.33
BRCA1P38398 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC6.73□□□□□ -1.33
BRCA1P38398 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC6.73□□□□□ -1.33
BRCA1P38398 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC6.73□□□□□ -1.33
BRCA1P38398 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
BRCA1P38398 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
BRCA1P38398 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC6.73□□□□□ -1.33
BRCA1P38398 NAA25-201ENST00000261745 6010 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
BRCA1P38398 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
BRCA1P38398 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC6.73□□□□□ -1.33
BRCA1P38398 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
BRCA1P38398 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
BRCA1P38398 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC6.73□□□□□ -1.33
BRCA1P38398 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
BRCA1P38398 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC6.73□□□□□ -1.33
BRCA1P38398 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
BRCA1P38398 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.73□□□□□ -1.33
BRCA1P38398 RPS4XP9-201ENST00000405151 780 ntBASIC6.73□□□□□ -1.33
BRCA1P38398 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC6.73□□□□□ -1.33
BRCA1P38398 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC6.73□□□□□ -1.33
BRCA1P38398 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC6.73□□□□□ -1.33
BRCA1P38398 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.73□□□□□ -1.33
BRCA1P38398 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC6.73□□□□□ -1.33
BRCA1P38398 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC6.73□□□□□ -1.33
BRCA1P38398 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC6.73□□□□□ -1.33
BRCA1P38398 AL356752.1-201ENST00000615844 593 ntBASIC6.73□□□□□ -1.33
BRCA1P38398 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC6.73□□□□□ -1.33
BRCA1P38398 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC6.72□□□□□ -1.33
BRCA1P38398 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC6.72□□□□□ -1.33
BRCA1P38398 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
BRCA1P38398 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
BRCA1P38398 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
BRCA1P38398 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
BRCA1P38398 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
BRCA1P38398 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
BRCA1P38398 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC6.72□□□□□ -1.33
BRCA1P38398 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
BRCA1P38398 P2RY10P2-201ENST00000416730 913 ntBASIC6.72□□□□□ -1.33
BRCA1P38398 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC6.72□□□□□ -1.33
BRCA1P38398 RPS3AP38-201ENST00000435889 763 ntBASIC6.72□□□□□ -1.33
BRCA1P38398 RPS23P2-201ENST00000463671 415 ntBASIC6.72□□□□□ -1.33
BRCA1P38398 AC068587.1-201ENST00000483613 781 ntBASIC6.72□□□□□ -1.33
BRCA1P38398 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC6.72□□□□□ -1.33
BRCA1P38398 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC6.72□□□□□ -1.33
BRCA1P38398 IGHVIII-76-1-201ENST00000523776 286 ntBASIC6.72□□□□□ -1.33
BRCA1P38398 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
BRCA1P38398 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC6.72□□□□□ -1.33
BRCA1P38398 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC6.72□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms