Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AL353626.3-201ENST00000413399 657 ntBASIC6.6□□□□□ -1.35
COL4A5P29400 EI24P4-201ENST00000423683 1078 ntBASIC6.6□□□□□ -1.35
COL4A5P29400 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC6.6□□□□□ -1.35
COL4A5P29400 RPS3AP38-201ENST00000435889 763 ntBASIC6.6□□□□□ -1.35
COL4A5P29400 UBE2Q2P10-201ENST00000514854 900 ntBASIC6.6□□□□□ -1.35
COL4A5P29400 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
COL4A5P29400 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL4A5P29400 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC6.6□□□□□ -1.35
COL4A5P29400 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC6.6□□□□□ -1.35
COL4A5P29400 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC6.6□□□□□ -1.35
COL4A5P29400 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL4A5P29400 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.6□□□□□ -1.35
COL4A5P29400 AC234771.5-201ENST00000600161 514 ntBASIC6.6□□□□□ -1.35
COL4A5P29400 AC068790.4-201ENST00000602474 263 ntBASIC6.6□□□□□ -1.35
COL4A5P29400 AC012618.3-205ENST00000637896 1496 ntBASIC6.6□□□□□ -1.35
COL4A5P29400 CRYBG3-201ENST00000389622 10729 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
COL4A5P29400 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL4A5P29400 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL4A5P29400 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
COL4A5P29400 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC6.6□□□□□ -1.35
COL4A5P29400 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
COL4A5P29400 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
COL4A5P29400 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC6.59□□□□□ -1.35
COL4A5P29400 PABPC1P8-201ENST00000452851 2086 ntBASIC6.59□□□□□ -1.35
COL4A5P29400 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC6.59□□□□□ -1.35
COL4A5P29400 OLMALINC-203ENST00000641087 3779 ntBASIC6.59□□□□□ -1.35
COL4A5P29400 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A5P29400 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC6.59□□□□□ -1.35
COL4A5P29400 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
COL4A5P29400 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A5P29400 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC6.59□□□□□ -1.35
COL4A5P29400 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC6.59□□□□□ -1.35
COL4A5P29400 AL672138.1-201ENST00000450604 1015 ntBASIC6.59□□□□□ -1.35
COL4A5P29400 AC087360.1-201ENST00000518788 616 ntBASIC6.59□□□□□ -1.35
COL4A5P29400 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC6.59□□□□□ -1.35
COL4A5P29400 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC6.59□□□□□ -1.35
COL4A5P29400 AP002373.2-201ENST00000541631 1060 ntBASIC6.59□□□□□ -1.35
COL4A5P29400 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC6.59□□□□□ -1.35
COL4A5P29400 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC6.59□□□□□ -1.35
COL4A5P29400 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A5P29400 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A5P29400 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A5P29400 PPARGC1B-201ENST00000309241 10568 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A5P29400 KIF1B-202ENST00000377081 8746 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A5P29400 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC6.59□□□□□ -1.35
COL4A5P29400 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
COL4A5P29400 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
COL4A5P29400 SPATA31C1-201ENST00000420021 3895 ntBASIC6.59□□□□□ -1.35
COL4A5P29400 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A5P29400 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
COL4A5P29400 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL4A5P29400 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL4A5P29400 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC6.58□□□□□ -1.36
COL4A5P29400 RN7SKP95-201ENST00000362860 303 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC6.58□□□□□ -1.36
COL4A5P29400 AL353625.1-202ENST00000366273 571 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 DNAJA1P4-201ENST00000406473 1166 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 RNA5SP487-201ENST00000410186 122 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A5P29400 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A5P29400 VDAC1P6-201ENST00000430062 855 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 RPL31P44-201ENST00000447680 377 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 AL596266.1-201ENST00000448132 400 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC6.58□□□□□ -1.36
COL4A5P29400 AC002075.1-201ENST00000457396 676 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 snoU13.20-201ENST00000459180 104 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 AC009127.1-201ENST00000467090 155 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 AC092905.1-201ENST00000467527 949 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 MTND6P2-201ENST00000512226 524 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC6.58□□□□□ -1.36
COL4A5P29400 OR7H2P-201ENST00000513483 306 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 AC078899.1-201ENST00000521432 1185 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC6.58□□□□□ -1.36
COL4A5P29400 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC6.58□□□□□ -1.36
COL4A5P29400 MIR4691-201ENST00000583764 85 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 AC011447.4-201ENST00000587562 111 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A5P29400 AP000346.3-201ENST00000622821 210 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC6.58□□□□□ -1.36
COL4A5P29400 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
COL4A5P29400 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A5P29400 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC6.58□□□□□ -1.36
COL4A5P29400 AC006511.3-201ENST00000624929 1783 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A5P29400 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A5P29400 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.58□□□□□ -1.36
COL4A5P29400 AC018809.2-201ENST00000602436 3823 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 FAM186A-204ENST00000543111 8200 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
COL4A5P29400 AC026951.1-201ENST00000559530 2459 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A5P29400 CHD2-201ENST00000394196 9363 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
COL4A5P29400 ETV1-210ENST00000430479 6740 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A5P29400 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A5P29400 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC6.58□□□□□ -1.36
COL4A5P29400 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A5P29400 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A5P29400 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC6.58□□□□□ -1.36
COL4A5P29400 RN7SKP113-201ENST00000363891 295 ntBASIC6.58□□□□□ -1.36
COL4A5P29400 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A5P29400 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms