Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SDC1P18827 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.4□□□□□ -1.54
SDC1P18827 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SDC1P18827 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
SDC1P18827 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC5.4□□□□□ -1.54
SDC1P18827 SNORA81-201ENST00000408493 178 ntBASIC5.4□□□□□ -1.54
SDC1P18827 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
SDC1P18827 RNF10P1-201ENST00000418589 369 ntBASIC5.4□□□□□ -1.54
SDC1P18827 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.4□□□□□ -1.54
SDC1P18827 RPL5P2-201ENST00000429598 854 ntBASIC5.4□□□□□ -1.54
SDC1P18827 PCBP2P1-201ENST00000437262 977 ntBASIC5.4□□□□□ -1.54
SDC1P18827 VN1R96P-201ENST00000446052 858 ntBASIC5.4□□□□□ -1.54
SDC1P18827 RPSAP37-201ENST00000470913 821 ntBASIC5.4□□□□□ -1.54
SDC1P18827 RPS17P15-201ENST00000475609 349 ntBASIC5.4□□□□□ -1.54
SDC1P18827 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SDC1P18827 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
SDC1P18827 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.4□□□□□ -1.54
SDC1P18827 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.4□□□□□ -1.54
SDC1P18827 OR5H7P-201ENST00000514084 930 ntBASIC5.4□□□□□ -1.54
SDC1P18827 RN7SKP253-201ENST00000516424 309 ntBASIC5.4□□□□□ -1.54
SDC1P18827 IGLV3-24-201ENST00000517477 197 ntBASIC5.4□□□□□ -1.54
SDC1P18827 AC021678.3-201ENST00000517893 476 ntBASIC5.4□□□□□ -1.54
SDC1P18827 AC122688.1-201ENST00000541494 223 ntBASIC5.4□□□□□ -1.54
SDC1P18827 AC006512.2-201ENST00000543250 486 ntBASIC5.4□□□□□ -1.54
SDC1P18827 HSPE1P2-201ENST00000554777 306 ntBASIC5.4□□□□□ -1.54
SDC1P18827 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.4□□□□□ -1.54
SDC1P18827 AC026826.3-201ENST00000561747 158 ntBASIC5.4□□□□□ -1.54
SDC1P18827 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.4□□□□□ -1.54
SDC1P18827 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
SDC1P18827 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.4□□□□□ -1.54
SDC1P18827 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.4□□□□□ -1.54
SDC1P18827 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.4□□□□□ -1.54
SDC1P18827 AC125494.2-201ENST00000602431 657 ntBASIC5.4□□□□□ -1.54
SDC1P18827 RPL12P48-201ENST00000605620 304 ntBASIC5.4□□□□□ -1.54
SDC1P18827 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC5.4□□□□□ -1.54
SDC1P18827 AC018690.1-201ENST00000608144 626 ntBASIC5.4□□□□□ -1.54
SDC1P18827 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.4□□□□□ -1.54
SDC1P18827 AC007786.3-201ENST00000615154 596 ntBASIC5.4□□□□□ -1.54
SDC1P18827 AC090607.5-201ENST00000615692 224 ntBASIC5.4□□□□□ -1.54
SDC1P18827 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.4□□□□□ -1.54
SDC1P18827 MIR6133-201ENST00000617057 108 ntBASIC5.4□□□□□ -1.54
SDC1P18827 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SDC1P18827 AP001052.1-201ENST00000626421 99 ntBASIC5.4□□□□□ -1.54
SDC1P18827 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.4□□□□□ -1.54
SDC1P18827 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SDC1P18827 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.55
SDC1P18827 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.4□□□□□ -1.55
SDC1P18827 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
SDC1P18827 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.55
SDC1P18827 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
SDC1P18827 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
SDC1P18827 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
SDC1P18827 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
SDC1P18827 CAP1P2-201ENST00000417455 1409 ntBASIC5.4□□□□□ -1.55
SDC1P18827 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SDC1P18827 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.39□□□□□ -1.55
SDC1P18827 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SDC1P18827 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
SDC1P18827 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
SDC1P18827 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SDC1P18827 RNU1-65P-201ENST00000363919 148 ntBASIC5.39□□□□□ -1.55
SDC1P18827 RNA5SP30-201ENST00000365552 115 ntBASIC5.39□□□□□ -1.55
SDC1P18827 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
SDC1P18827 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SDC1P18827 NPM1P37-201ENST00000403105 874 ntBASIC5.39□□□□□ -1.55
SDC1P18827 AK4P4-201ENST00000419465 646 ntBASIC5.39□□□□□ -1.55
SDC1P18827 NENFP1-201ENST00000419476 466 ntBASIC5.39□□□□□ -1.55
SDC1P18827 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.39□□□□□ -1.55
SDC1P18827 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC5.39□□□□□ -1.55
SDC1P18827 BX323845.3-201ENST00000428215 527 ntBASIC5.39□□□□□ -1.55
SDC1P18827 OR6C71P-201ENST00000432580 913 ntBASIC5.39□□□□□ -1.55
SDC1P18827 NPM1P18-201ENST00000434232 732 ntBASIC5.39□□□□□ -1.55
SDC1P18827 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SDC1P18827 AC083899.1-201ENST00000454465 3819 ntBASIC5.39□□□□□ -1.55
SDC1P18827 AC118758.1-202ENST00000454719 225 ntBASIC5.39□□□□□ -1.55
SDC1P18827 ATP5LP5-201ENST00000483050 299 ntBASIC5.39□□□□□ -1.55
SDC1P18827 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.39□□□□□ -1.55
SDC1P18827 AC025458.1-201ENST00000506046 166 ntBASIC5.39□□□□□ -1.55
SDC1P18827 SCARNA6.1-201ENST00000516989 238 ntBASIC5.39□□□□□ -1.55
SDC1P18827 OR4A17P-201ENST00000526032 904 ntBASIC5.39□□□□□ -1.55
SDC1P18827 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.39□□□□□ -1.55
SDC1P18827 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.39□□□□□ -1.55
SDC1P18827 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC5.39□□□□□ -1.55
SDC1P18827 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.39□□□□□ -1.55
SDC1P18827 AC018809.2-201ENST00000602436 3823 ntBASIC5.39□□□□□ -1.55
SDC1P18827 AL591926.1-201ENST00000620542 217 ntBASIC5.39□□□□□ -1.55
SDC1P18827 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.39□□□□□ -1.55
SDC1P18827 PWAR1-201ENST00000624188 2414 ntBASIC5.39□□□□□ -1.55
SDC1P18827 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.39□□□□□ -1.55
SDC1P18827 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.39□□□□□ -1.55
SDC1P18827 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
SDC1P18827 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.39□□□□□ -1.55
SDC1P18827 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.39□□□□□ -1.55
SDC1P18827 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.39□□□□□ -1.55
SDC1P18827 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SDC1P18827 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SDC1P18827 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
SDC1P18827 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
SDC1P18827 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SDC1P18827 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms