Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHOX2O60902 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHOX2O60902 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHOX2O60902 AL033519.1-201ENST00000407266 307 ntBASIC5.7□□□□□ -1.5
SHOX2O60902 RPS4XP5-201ENST00000419038 768 ntBASIC5.7□□□□□ -1.5
SHOX2O60902 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SHOX2O60902 GAPDHP37-201ENST00000442317 968 ntBASIC5.7□□□□□ -1.5
SHOX2O60902 OR2AF1P-201ENST00000454899 889 ntBASIC5.7□□□□□ -1.5
SHOX2O60902 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC5.7□□□□□ -1.5
SHOX2O60902 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC5.7□□□□□ -1.5
SHOX2O60902 RPL34P33-201ENST00000486062 334 ntBASIC5.7□□□□□ -1.5
SHOX2O60902 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.7□□□□□ -1.5
SHOX2O60902 ASNSP4-201ENST00000511103 447 ntBASIC5.7□□□□□ -1.5
SHOX2O60902 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC5.7□□□□□ -1.5
SHOX2O60902 RNA5SP206-201ENST00000516703 121 ntBASIC5.7□□□□□ -1.5
SHOX2O60902 AC100784.1-201ENST00000522790 310 ntBASIC5.7□□□□□ -1.5
SHOX2O60902 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.7□□□□□ -1.5
SHOX2O60902 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.7□□□□□ -1.5
SHOX2O60902 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC5.7□□□□□ -1.5
SHOX2O60902 GARSP1-201ENST00000570895 719 ntBASIC5.7□□□□□ -1.5
SHOX2O60902 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.7□□□□□ -1.5
SHOX2O60902 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
SHOX2O60902 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHOX2O60902 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHOX2O60902 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHOX2O60902 AC011447.7-201ENST00000624228 1590 ntBASIC5.7□□□□□ -1.5
SHOX2O60902 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHOX2O60902 AP005432.1-201ENST00000580891 3485 ntBASIC5.7□□□□□ -1.5
SHOX2O60902 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHOX2O60902 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SHOX2O60902 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SHOX2O60902 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SHOX2O60902 Z83820.1-201ENST00000456978 1499 ntBASIC5.7□□□□□ -1.5
SHOX2O60902 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.7□□□□□ -1.5
SHOX2O60902 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHOX2O60902 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHOX2O60902 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.69□□□□□ -1.5
SHOX2O60902 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC5.69□□□□□ -1.5
SHOX2O60902 AL034549.2-201ENST00000618285 3373 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHOX2O60902 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
SHOX2O60902 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.69□□□□□ -1.5
SHOX2O60902 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SHOX2O60902 RNA5SP85-201ENST00000365378 119 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC5.69□□□□□ -1.5
SHOX2O60902 OR1L6-202ENST00000373684 1044 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 AL157702.1-201ENST00000398764 426 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.69□□□□□ -1.5
SHOX2O60902 PPIAP9-201ENST00000403866 498 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 RN7SKP286-201ENST00000410894 299 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.69□□□□□ -1.5
SHOX2O60902 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC5.69□□□□□ -1.5
SHOX2O60902 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.69□□□□□ -1.5
SHOX2O60902 HSPE1P27-201ENST00000430808 296 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 TMEM183AP1-205ENST00000432739 290 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 AL445928.1-201ENST00000435545 222 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 UBQLN1P1-207ENST00000441056 1169 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC5.69□□□□□ -1.5
SHOX2O60902 KF459542.1-201ENST00000450908 553 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 AZGP1P2-201ENST00000454506 345 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 AP000797.2-201ENST00000475768 606 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 SNRPCP11-201ENST00000492453 205 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 NATP-201ENST00000523491 878 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHOX2O60902 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC5.69□□□□□ -1.5
SHOX2O60902 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.69□□□□□ -1.5
SHOX2O60902 RPL41P2-201ENST00000544920 409 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.69□□□□□ -1.5
SHOX2O60902 AL390726.5-202ENST00000564800 256 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.69□□□□□ -1.5
SHOX2O60902 MIR4443-201ENST00000585052 53 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 AC108738.1-201ENST00000603703 237 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 AL390877.1-201ENST00000605704 214 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 AC239803.2-201ENST00000610161 430 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.69□□□□□ -1.5
SHOX2O60902 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.69□□□□□ -1.5
SHOX2O60902 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
SHOX2O60902 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.69□□□□□ -1.5
SHOX2O60902 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.69□□□□□ -1.5
SHOX2O60902 STX3-208ENST00000641815 3236 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.69□□□□□ -1.5
SHOX2O60902 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHOX2O60902 AC068870.1-201ENST00000563737 2455 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.69□□□□□ -1.5
SHOX2O60902 EIF3EP1-201ENST00000433978 1316 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 ZNF652P1-201ENST00000442420 1309 ntBASIC5.69□□□□□ -1.5
SHOX2O60902 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SHOX2O60902 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHOX2O60902 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SHOX2O60902 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHOX2O60902 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SHOX2O60902 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SHOX2O60902 CASC19-248ENST00000641674 1356 ntBASIC5.68□□□□□ -1.5
SHOX2O60902 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHOX2O60902 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
SHOX2O60902 LZIC-203ENST00000400903 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHOX2O60902 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.68□□□□□ -1.5
SHOX2O60902 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SHOX2O60902 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC5.68□□□□□ -1.5
SHOX2O60902 RNA5SP122-201ENST00000384457 108 ntBASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms