Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 OR4F13P-202ENST00000560066 2054 ntBASIC5.67□□□□□ -1.5
TREX1Q9NSU2 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 AC117434.1-201ENST00000419971 836 ntBASIC5.67□□□□□ -1.5
TREX1Q9NSU2 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.67□□□□□ -1.5
TREX1Q9NSU2 AL022331.1-201ENST00000429025 477 ntBASIC5.67□□□□□ -1.5
TREX1Q9NSU2 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 TMEM183AP1-205ENST00000432739 290 ntBASIC5.67□□□□□ -1.5
TREX1Q9NSU2 AC138761.5-201ENST00000433967 325 ntBASIC5.67□□□□□ -1.5
TREX1Q9NSU2 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 NANOGP9-201ENST00000439890 892 ntBASIC5.67□□□□□ -1.5
TREX1Q9NSU2 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 DUTP7-201ENST00000507982 486 ntBASIC5.67□□□□□ -1.5
TREX1Q9NSU2 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 MIR4271-201ENST00000582451 67 ntBASIC5.67□□□□□ -1.5
TREX1Q9NSU2 AC108865.2-201ENST00000606881 432 ntBASIC5.67□□□□□ -1.5
TREX1Q9NSU2 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 AC025262.3-201ENST00000623666 360 ntBASIC5.67□□□□□ -1.5
TREX1Q9NSU2 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
TREX1Q9NSU2 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 GAPDHP24-201ENST00000328713 983 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 AC127526.2-201ENST00000426436 775 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 LINC02210-201ENST00000444561 288 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 AL596266.1-201ENST00000448132 400 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 HLA-DPA3-207ENST00000454398 229 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 AC019084.1-201ENST00000457337 432 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 RPS23P6-201ENST00000466136 431 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 AC022215.1-201ENST00000481770 362 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 ATP5LP5-201ENST00000483050 299 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 GOLGA5P1-201ENST00000507317 980 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 AC111000.6-201ENST00000514471 709 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 AC122688.1-201ENST00000541494 223 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 MIR4311-201ENST00000580794 100 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 AC134669.1-201ENST00000581275 672 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 AC129915.3-201ENST00000634128 948 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 PWAR1-201ENST00000624188 2414 ntBASIC5.66□□□□□ -1.5
TREX1Q9NSU2 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.66□□□□□ -1.5
TREX1Q9NSU2 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TREX1Q9NSU2 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 188.1 ms