Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL355480.4-201ENST00000626823 69 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC016582.3-206ENST00000636547 207 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 CHAF1B-201ENST00000314103 4480 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 MAP2-203ENST00000361559 2038 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 ADH6-203ENST00000394899 2802 ntAPPRIS ALT1 TSL 2 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 RAPGEF5-201ENST00000344041 6621 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 B4GALT4-207ENST00000467604 5794 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 LINC00536-201ENST00000505156 2692 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 UEVLD-205ENST00000396197 4156 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AL591543.1-202ENST00000642095 4149 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 ASAH1-227ENST00000636455 1777 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC015689.2-201ENST00000528172 1738 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 LINC01924-201ENST00000589376 1722 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AL133464.1-201ENST00000635130 1705 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AL590763.1-201ENST00000398297 1545 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 NPIPB9-202ENST00000550983 2123 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 SLC14A1-221ENST00000619403 3823 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 CHURC1-203ENST00000549115 2629 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 ZNF844-202ENST00000441304 2036 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 ARPP21-221ENST00000444190 3182 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 EED-206ENST00000527888 1422 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 ESRRG-221ENST00000493603 5304 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 BEST3-205ENST00000488961 2878 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 LINC02159-202ENST00000518580 2323 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 OR51A10P-201ENST00000307165 937 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 RNU6-723P-201ENST00000383973 107 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 MIR181C-201ENST00000384881 110 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AL590762.1-201ENST00000391782 432 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 VN1R33P-201ENST00000411800 887 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC092634.6-201ENST00000418558 192 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC007679.2-201ENST00000422116 781 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 RNF11P2-201ENST00000427702 440 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC005033.1-201ENST00000428904 813 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC092162.2-203ENST00000430460 579 ntTSL 4 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 FMO7P-201ENST00000436045 768 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 CYP2C56P-201ENST00000440076 291 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 TULP3P1-201ENST00000442322 816 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 BMS1P10-201ENST00000443754 1120 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC114488.2-222ENST00000445166 362 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AL035551.1-201ENST00000446931 348 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 MRPS21P1-201ENST00000453850 223 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 HMGB1P4-201ENST00000455362 567 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 RPS18P13-201ENST00000461260 454 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 GRHL1-206ENST00000480736 572 ntTSL 4 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 ZNF695-204ENST00000487338 826 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC127024.1-201ENST00000490847 418 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 PFN2-217ENST00000498307 556 ntTSL 4 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 NPY6R-201ENST00000503807 1112 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC091874.2-201ENST00000505889 720 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 ZNF721-203ENST00000506646 935 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC079921.2-201ENST00000507579 455 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC006070.1-201ENST00000508151 193 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC087276.1-201ENST00000529659 480 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 OR4A45P-201ENST00000529954 901 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 LINC02413-202ENST00000552353 898 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 LINC02330-201ENST00000557784 555 ntTSL 4 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 HNRNPA1P71-201ENST00000559135 950 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 BLID-201ENST00000560104 862 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AGGF1P8-201ENST00000562979 1000 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC009063.1-201ENST00000563342 702 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 DNM1P31-201ENST00000564149 696 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 RN7SL25P-201ENST00000583862 260 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 ZNF675-202ENST00000596211 581 ntTSL 4 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AL035417.2-201ENST00000603887 796 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC103724.4-201ENST00000605981 292 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 RNU6-88P-201ENST00000606801 100 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AP001596.2-201ENST00000608410 312 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AP004247.4-201ENST00000608484 942 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC004839.1-201ENST00000610269 501 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC008115.3-201ENST00000614874 549 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 MESTIT1_2.1-201ENST00000616328 235 ntBASIC5.84□□□□□ -1.47
CCDC140Q96MF4 AC106875.2-201ENST00000617634 596 ntTSL 2 BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms