Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 FAM27E4-201ENST00000605259 342 ntBASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 DPY19L1P1-201ENST00000417811 2594 ntBASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 AC110373.1-201ENST00000505994 3505 ntBASIC6.02□□□□□ -1.45
HDDC3Q8N4P3 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AC073429.2-201ENST00000569694 1444 ntBASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 PROS2P-201ENST00000474651 1951 ntBASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 PPCS-201ENST00000372556 984 ntTSL 2 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 KIF4CP-201ENST00000422742 1279 ntBASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AL034379.1-201ENST00000423216 253 ntBASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AC126120.1-201ENST00000431082 470 ntBASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 TPM3P3-201ENST00000521343 354 ntBASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AC006530.1-201ENST00000555980 571 ntBASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AL356801.1-201ENST00000559320 294 ntBASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 OR4H6P-201ENST00000563771 921 ntBASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AC016839.1-201ENST00000578162 867 ntBASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 QTRT1P1-201ENST00000604344 1078 ntBASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 AL136295.6-201ENST00000610486 658 ntBASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 PARP4P2-201ENST00000446672 3326 ntBASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 MAPK10-261ENST00000641050 3109 ntBASIC6.01□□□□□ -1.45
HDDC3Q8N4P3 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC6□□□□□ -1.45
HDDC3Q8N4P3 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
HDDC3Q8N4P3 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC6□□□□□ -1.45
HDDC3Q8N4P3 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6□□□□□ -1.45
HDDC3Q8N4P3 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
HDDC3Q8N4P3 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
HDDC3Q8N4P3 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC6□□□□□ -1.45
HDDC3Q8N4P3 RNU1-19P-201ENST00000363306 165 ntBASIC6□□□□□ -1.45
HDDC3Q8N4P3 AC016739.1-201ENST00000405359 345 ntBASIC6□□□□□ -1.45
HDDC3Q8N4P3 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC6□□□□□ -1.45
HDDC3Q8N4P3 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC6□□□□□ -1.45
HDDC3Q8N4P3 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6□□□□□ -1.45
HDDC3Q8N4P3 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC6□□□□□ -1.45
HDDC3Q8N4P3 RN7SL466P-201ENST00000497546 295 ntBASIC6□□□□□ -1.45
HDDC3Q8N4P3 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6□□□□□ -1.45
HDDC3Q8N4P3 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC6□□□□□ -1.45
HDDC3Q8N4P3 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC6□□□□□ -1.45
HDDC3Q8N4P3 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC6□□□□□ -1.45
HDDC3Q8N4P3 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC6□□□□□ -1.45
HDDC3Q8N4P3 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC6□□□□□ -1.45
HDDC3Q8N4P3 AC025423.2-201ENST00000537570 439 ntBASIC6□□□□□ -1.45
HDDC3Q8N4P3 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC6□□□□□ -1.45
HDDC3Q8N4P3 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC6□□□□□ -1.45
HDDC3Q8N4P3 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
HDDC3Q8N4P3 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
HDDC3Q8N4P3 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
HDDC3Q8N4P3 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
HDDC3Q8N4P3 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
HDDC3Q8N4P3 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
HDDC3Q8N4P3 AL137141.1-201ENST00000624622 4836 ntBASIC6□□□□□ -1.45
HDDC3Q8N4P3 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
HDDC3Q8N4P3 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC6□□□□□ -1.45
HDDC3Q8N4P3 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
HDDC3Q8N4P3 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC6□□□□□ -1.45
HDDC3Q8N4P3 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.99□□□□□ -1.45
HDDC3Q8N4P3 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.99□□□□□ -1.45
HDDC3Q8N4P3 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
HDDC3Q8N4P3 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
HDDC3Q8N4P3 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.99□□□□□ -1.45
HDDC3Q8N4P3 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
HDDC3Q8N4P3 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms