Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 AL022323.4-201ENST00000623980 13120 ntBASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 RNA5SP339-201ENST00000390987 122 ntBASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 AL645733.1-201ENST00000402250 217 ntBASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 AL390774.1-201ENST00000411924 246 ntBASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 AC087360.1-201ENST00000518788 616 ntBASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 MIR4260-201ENST00000583107 67 ntBASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC88AQ3V6T2 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 DPY19L2P2-203ENST00000435536 1858 ntBASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 AC068733.2-201ENST00000605434 1418 ntBASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 RNA5SP335-201ENST00000363817 110 ntBASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 RN7SKP213-201ENST00000410746 298 ntBASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 RN7SKP279-201ENST00000411383 298 ntBASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 RN7SL352P-201ENST00000466002 277 ntBASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 AC092324.1-201ENST00000468671 324 ntBASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 AC007686.1-201ENST00000488511 463 ntBASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 AC021678.3-201ENST00000517893 476 ntBASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 AP004607.2-201ENST00000533949 322 ntBASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 AC012616.1-201ENST00000600294 197 ntBASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 MIR7703-201ENST00000620784 77 ntBASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 AC026951.1-201ENST00000559530 2459 ntBASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.97□□□□□ -1.29
CCDC88AQ3V6T2 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 ADIG-201ENST00000373348 430 ntTSL 2 BASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 DSTNP5-201ENST00000427921 523 ntBASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 AC011753.3-201ENST00000443436 406 ntBASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 RN7SL346P-201ENST00000491561 294 ntBASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 AC008115.3-201ENST00000614874 549 ntBASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC6.96□□□□□ -1.29
CCDC88AQ3V6T2 ZNF658B-201ENST00000602828 3408 ntBASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 SNORD8-201ENST00000363915 110 ntBASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 U3.36-201ENST00000408418 213 ntBASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 AC116036.1-201ENST00000412199 367 ntBASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 RPS18P6-201ENST00000476880 458 ntBASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 OR5AZ1P-201ENST00000527448 943 ntBASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 AC025574.2-201ENST00000615621 514 ntBASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC88AQ3V6T2 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
CCDC88AQ3V6T2 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms