Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AC005261.6-201ENST00000623072 1387 ntBASIC5.94□□□□□ -1.46
COL28A1Q2UY09 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 RNU6-697P-201ENST00000363348 107 ntBASIC5.94□□□□□ -1.46
COL28A1Q2UY09 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 NPM1P4-201ENST00000414095 812 ntBASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 RPL23AP85-201ENST00000421838 433 ntBASIC5.94□□□□□ -1.46
COL28A1Q2UY09 CR848007.2-201ENST00000424918 787 ntBASIC5.94□□□□□ -1.46
COL28A1Q2UY09 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 SUMO2P3-201ENST00000438311 288 ntBASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AC022206.1-201ENST00000495947 347 ntBASIC5.94□□□□□ -1.46
COL28A1Q2UY09 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AC093815.1-201ENST00000508637 280 ntBASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AC005000.1-201ENST00000536192 288 ntBASIC5.94□□□□□ -1.46
COL28A1Q2UY09 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 RN7SL475P-201ENST00000583379 298 ntBASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AC104695.2-201ENST00000605056 775 ntBASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AC097467.4-201ENST00000605504 141 ntBASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AC079395.2-201ENST00000610982 737 ntBASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AL592429.1-201ENST00000403909 1473 ntBASIC5.94□□□□□ -1.46
COL28A1Q2UY09 CR382285.2-201ENST00000624662 1495 ntBASIC5.94□□□□□ -1.46
COL28A1Q2UY09 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL28A1Q2UY09 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AC010624.4-201ENST00000597606 1351 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 NAMPTP1-201ENST00000440465 2514 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 USP46-202ENST00000451218 4622 ntTSL 5 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 MAPK10-287ENST00000641217 3037 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AC103591.2-201ENST00000265259 766 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 RNU6-618P-201ENST00000363518 112 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AL589655.1-201ENST00000405398 482 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 RN7SKP281-201ENST00000410472 352 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AC098592.2-201ENST00000413158 265 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AC021876.1-201ENST00000425959 359 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 SOCS5P1-201ENST00000440415 949 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 REG1CP-206ENST00000447469 496 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AC009963.4-201ENST00000448535 339 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 AL645937.3-201ENST00000453647 936 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 NFU1-207ENST00000462320 558 ntTSL 4 BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 RN7SL369P-201ENST00000477138 299 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 SIAH1P1-201ENST00000479411 923 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 RN7SL193P-201ENST00000491708 276 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL28A1Q2UY09 OR4D12P-201ENST00000509361 911 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 KHDC1P1-201ENST00000511053 508 ntBASIC5.93□□□□□ -1.46
COL28A1Q2UY09 RNA5SP434-201ENST00000516647 121 ntBASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms