Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
FOXA1P55317 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
FOXA1P55317 AC018765.1-201ENST00000623357 3446 ntBASIC5.44□□□□□ -1.54
FOXA1P55317 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
FOXA1P55317 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
FOXA1P55317 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
FOXA1P55317 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.43□□□□□ -1.54
FOXA1P55317 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
FOXA1P55317 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
FOXA1P55317 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
FOXA1P55317 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.43□□□□□ -1.54
FOXA1P55317 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
FOXA1P55317 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
FOXA1P55317 AL357153.1-201ENST00000500016 2941 ntTSL 2 BASIC5.43□□□□□ -1.54
FOXA1P55317 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
FOXA1P55317 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.43□□□□□ -1.54
FOXA1P55317 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.43□□□□□ -1.54
FOXA1P55317 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
FOXA1P55317 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
FOXA1P55317 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
FOXA1P55317 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
FOXA1P55317 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.43□□□□□ -1.54
FOXA1P55317 AL596266.1-201ENST00000448132 400 ntBASIC5.43□□□□□ -1.54
FOXA1P55317 AZGP1P2-201ENST00000454506 345 ntBASIC5.43□□□□□ -1.54
FOXA1P55317 NXT1P1-201ENST00000458481 316 ntBASIC5.43□□□□□ -1.54
FOXA1P55317 ABCC13-202ENST00000463099 3842 ntBASIC5.43□□□□□ -1.54
FOXA1P55317 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.43□□□□□ -1.54
FOXA1P55317 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC5.43□□□□□ -1.54
FOXA1P55317 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC5.43□□□□□ -1.54
FOXA1P55317 AC027369.2-201ENST00000528030 440 ntBASIC5.43□□□□□ -1.54
FOXA1P55317 TRIM51DP-201ENST00000529746 596 ntBASIC5.43□□□□□ -1.54
FOXA1P55317 AC006512.2-201ENST00000543250 486 ntBASIC5.43□□□□□ -1.54
FOXA1P55317 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC5.43□□□□□ -1.54
FOXA1P55317 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.43□□□□□ -1.54
FOXA1P55317 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC5.43□□□□□ -1.54
FOXA1P55317 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.43□□□□□ -1.54
FOXA1P55317 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.43□□□□□ -1.54
FOXA1P55317 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC5.43□□□□□ -1.54
FOXA1P55317 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.43□□□□□ -1.54
FOXA1P55317 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
FOXA1P55317 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.43□□□□□ -1.54
FOXA1P55317 AL139124.1-201ENST00000609123 421 ntBASIC5.43□□□□□ -1.54
FOXA1P55317 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
FOXA1P55317 NCOA4P2-201ENST00000340589 1813 ntBASIC5.43□□□□□ -1.54
FOXA1P55317 EIF3EP2-201ENST00000423042 1814 ntBASIC5.43□□□□□ -1.54
FOXA1P55317 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
FOXA1P55317 AP000432.2-201ENST00000624164 2048 ntBASIC5.43□□□□□ -1.54
FOXA1P55317 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
FOXA1P55317 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
FOXA1P55317 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.43□□□□□ -1.54
FOXA1P55317 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
FOXA1P55317 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.43□□□□□ -1.54
FOXA1P55317 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
FOXA1P55317 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
FOXA1P55317 AL137141.1-201ENST00000624622 4836 ntBASIC5.43□□□□□ -1.54
FOXA1P55317 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
FOXA1P55317 MRE11P1-201ENST00000464884 2127 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 AL359715.3-201ENST00000569267 2123 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
FOXA1P55317 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
FOXA1P55317 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC5.42□□□□□ -1.54
FOXA1P55317 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.42□□□□□ -1.54
FOXA1P55317 BCORP1-203ENST00000513194 5093 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
FOXA1P55317 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.42□□□□□ -1.54
FOXA1P55317 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
FOXA1P55317 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
FOXA1P55317 SNORA64.1-201ENST00000362600 132 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 SSR1P1-201ENST00000407630 814 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 MIR1203-201ENST00000408812 85 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.42□□□□□ -1.54
FOXA1P55317 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.42□□□□□ -1.54
FOXA1P55317 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.42□□□□□ -1.54
FOXA1P55317 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.42□□□□□ -1.54
FOXA1P55317 AC108751.3-201ENST00000461814 1020 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 UBFD1P1-201ENST00000473259 814 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC5.42□□□□□ -1.54
FOXA1P55317 AC117394.1-201ENST00000477323 567 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 ATP5LP5-201ENST00000483050 299 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.42□□□□□ -1.54
FOXA1P55317 AC025458.1-201ENST00000506046 166 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 APOBEC3AP1-201ENST00000511396 287 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 AC079064.1-201ENST00000528365 362 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 PMS2P3-207ENST00000529061 717 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 OR5AM1P-201ENST00000532136 1032 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.42□□□□□ -1.54
FOXA1P55317 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC5.42□□□□□ -1.54
FOXA1P55317 DPPA2P4-201ENST00000563717 878 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.42□□□□□ -1.54
FOXA1P55317 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.42□□□□□ -1.54
FOXA1P55317 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.42□□□□□ -1.54
FOXA1P55317 AL359091.2-201ENST00000609303 556 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.42□□□□□ -1.54
FOXA1P55317 AL162574.1-201ENST00000615702 950 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 AC024884.1-201ENST00000620583 399 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
FOXA1P55317 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
FOXA1P55317 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.42□□□□□ -1.54
FOXA1P55317 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.42□□□□□ -1.54
FOXA1P55317 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms