Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CDX1P47902 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
CDX1P47902 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.03□□□□□ -1.6
CDX1P47902 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.03□□□□□ -1.6
CDX1P47902 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CDX1P47902 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC5.03□□□□□ -1.6
CDX1P47902 AL050335.1-201ENST00000396909 869 ntBASIC5.03□□□□□ -1.6
CDX1P47902 AL034403.1-201ENST00000399414 885 ntBASIC5.03□□□□□ -1.6
CDX1P47902 SNORA79B-201ENST00000410557 148 ntBASIC5.03□□□□□ -1.6
CDX1P47902 AL158827.1-201ENST00000416300 391 ntBASIC5.03□□□□□ -1.6
CDX1P47902 GNG5P5-201ENST00000420444 220 ntBASIC5.03□□□□□ -1.6
CDX1P47902 CYCSP52-201ENST00000422857 310 ntBASIC5.03□□□□□ -1.6
CDX1P47902 AC099782.1-201ENST00000425889 474 ntBASIC5.03□□□□□ -1.6
CDX1P47902 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC5.03□□□□□ -1.6
CDX1P47902 ARMC4P1-201ENST00000438905 707 ntBASIC5.03□□□□□ -1.6
CDX1P47902 MTCO3P43-201ENST00000440974 771 ntBASIC5.03□□□□□ -1.6
CDX1P47902 EEF1B2P3-201ENST00000447718 678 ntBASIC5.03□□□□□ -1.6
CDX1P47902 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC5.03□□□□□ -1.6
CDX1P47902 OR52E7P-201ENST00000452394 933 ntBASIC5.03□□□□□ -1.6
CDX1P47902 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC5.03□□□□□ -1.6
CDX1P47902 OSTCP1-201ENST00000455507 450 ntBASIC5.03□□□□□ -1.6
CDX1P47902 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC5.03□□□□□ -1.6
CDX1P47902 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC5.03□□□□□ -1.6
CDX1P47902 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC5.03□□□□□ -1.6
CDX1P47902 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC5.03□□□□□ -1.6
CDX1P47902 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC5.03□□□□□ -1.6
CDX1P47902 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CDX1P47902 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC5.03□□□□□ -1.6
CDX1P47902 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC5.03□□□□□ -1.6
CDX1P47902 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC5.03□□□□□ -1.6
CDX1P47902 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC5.03□□□□□ -1.6
CDX1P47902 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC5.03□□□□□ -1.6
CDX1P47902 GLYATL1P2-202ENST00000588046 902 ntBASIC5.03□□□□□ -1.6
CDX1P47902 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC5.03□□□□□ -1.6
CDX1P47902 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC5.03□□□□□ -1.6
CDX1P47902 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC5.03□□□□□ -1.6
CDX1P47902 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.03□□□□□ -1.6
CDX1P47902 AL591926.1-201ENST00000620542 217 ntBASIC5.03□□□□□ -1.6
CDX1P47902 AL122023.1-201ENST00000622847 530 ntBASIC5.03□□□□□ -1.6
CDX1P47902 AC073869.7-201ENST00000640874 297 ntBASIC5.03□□□□□ -1.6
CDX1P47902 5S_rRNA.29-201ENST00000641250 107 ntBASIC5.03□□□□□ -1.6
CDX1P47902 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC5.03□□□□□ -1.6
CDX1P47902 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CDX1P47902 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
CDX1P47902 AC125238.2-201ENST00000430003 1440 ntBASIC5.03□□□□□ -1.6
CDX1P47902 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC5.03□□□□□ -1.6
CDX1P47902 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CDX1P47902 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
CDX1P47902 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC5.03□□□□□ -1.6
CDX1P47902 AC011416.1-201ENST00000514947 1732 ntBASIC5.03□□□□□ -1.6
CDX1P47902 AL136984.1-201ENST00000607611 1893 ntBASIC5.03□□□□□ -1.6
CDX1P47902 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
CDX1P47902 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CDX1P47902 NEK2P2-201ENST00000438441 1338 ntBASIC5.02□□□□□ -1.61
CDX1P47902 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC5.02□□□□□ -1.61
CDX1P47902 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.02□□□□□ -1.61
CDX1P47902 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC5.02□□□□□ -1.61
CDX1P47902 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CDX1P47902 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CDX1P47902 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.02□□□□□ -1.61
CDX1P47902 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CDX1P47902 MAPK10-328ENST00000641553 4009 ntBASIC5.02□□□□□ -1.61
CDX1P47902 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
CDX1P47902 RN7SKP69-201ENST00000365390 305 ntBASIC5.02□□□□□ -1.61
CDX1P47902 RN7SKP187-201ENST00000365536 330 ntBASIC5.02□□□□□ -1.61
CDX1P47902 AC104297.1-201ENST00000393779 870 ntBASIC5.02□□□□□ -1.61
CDX1P47902 CCNB2P1-201ENST00000399411 1150 ntBASIC5.02□□□□□ -1.61
CDX1P47902 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC5.02□□□□□ -1.61
CDX1P47902 RPL21P50-201ENST00000417698 477 ntBASIC5.02□□□□□ -1.61
CDX1P47902 AL139158.1-201ENST00000424719 340 ntBASIC5.02□□□□□ -1.61
CDX1P47902 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CDX1P47902 FAR1P1-201ENST00000427163 934 ntBASIC5.02□□□□□ -1.61
CDX1P47902 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC5.02□□□□□ -1.61
CDX1P47902 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC5.02□□□□□ -1.61
CDX1P47902 MED28P4-201ENST00000433137 572 ntBASIC5.02□□□□□ -1.61
CDX1P47902 MTND2P21-201ENST00000436242 1042 ntBASIC5.02□□□□□ -1.61
CDX1P47902 MTCYBP29-201ENST00000436327 1006 ntBASIC5.02□□□□□ -1.61
CDX1P47902 AL691517.1-201ENST00000440833 1235 ntBASIC5.02□□□□□ -1.61
CDX1P47902 AC245517.2-201ENST00000442890 346 ntBASIC5.02□□□□□ -1.61
CDX1P47902 AC079922.1-201ENST00000443291 359 ntBASIC5.02□□□□□ -1.61
CDX1P47902 OR2L9P-201ENST00000444456 913 ntBASIC5.02□□□□□ -1.61
CDX1P47902 AC093166.3-201ENST00000448785 303 ntBASIC5.02□□□□□ -1.61
CDX1P47902 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC5.02□□□□□ -1.61
CDX1P47902 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC5.02□□□□□ -1.61
CDX1P47902 AC118758.1-202ENST00000454719 225 ntBASIC5.02□□□□□ -1.61
CDX1P47902 SEPT7P3-201ENST00000455017 621 ntBASIC5.02□□□□□ -1.61
CDX1P47902 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CDX1P47902 H3F3AP5-201ENST00000475267 429 ntBASIC5.02□□□□□ -1.61
CDX1P47902 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.02□□□□□ -1.61
CDX1P47902 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC5.02□□□□□ -1.61
CDX1P47902 RN7SL362P-201ENST00000494228 267 ntBASIC5.02□□□□□ -1.61
CDX1P47902 SSR3-208ENST00000496050 579 ntTSL 4 BASIC5.02□□□□□ -1.61
CDX1P47902 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC5.02□□□□□ -1.61
CDX1P47902 AC113367.2-201ENST00000505749 160 ntBASIC5.02□□□□□ -1.61
CDX1P47902 HMGN1P16-201ENST00000508308 283 ntBASIC5.02□□□□□ -1.61
CDX1P47902 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
CDX1P47902 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC5.02□□□□□ -1.61
CDX1P47902 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC5.02□□□□□ -1.61
CDX1P47902 AL133399.1-201ENST00000527476 298 ntBASIC5.02□□□□□ -1.61
CDX1P47902 AC008055.1-201ENST00000547032 609 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms