Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
BRCA1P38398 AC004980.4-201ENST00000513375 203 ntBASIC6.77□□□□□ -1.33
BRCA1P38398 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC6.77□□□□□ -1.33
BRCA1P38398 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC6.77□□□□□ -1.33
BRCA1P38398 MIR4270-201ENST00000581799 70 ntBASIC6.77□□□□□ -1.33
BRCA1P38398 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC6.77□□□□□ -1.33
BRCA1P38398 AC068790.7-201ENST00000602347 528 ntBASIC6.77□□□□□ -1.33
BRCA1P38398 AL023583.1-201ENST00000607518 1143 ntBASIC6.77□□□□□ -1.33
BRCA1P38398 AC009948.3-201ENST00000603415 1798 ntBASIC6.77□□□□□ -1.33
BRCA1P38398 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
BRCA1P38398 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC6.76□□□□□ -1.33
BRCA1P38398 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
BRCA1P38398 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
BRCA1P38398 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
BRCA1P38398 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
BRCA1P38398 UTY-205ENST00000382896 6661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
BRCA1P38398 UTY-211ENST00000540140 6652 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
BRCA1P38398 UTY-214ENST00000617789 6682 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
BRCA1P38398 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC6.76□□□□□ -1.33
BRCA1P38398 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC6.76□□□□□ -1.33
BRCA1P38398 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.76□□□□□ -1.33
BRCA1P38398 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC6.76□□□□□ -1.33
BRCA1P38398 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
BRCA1P38398 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
BRCA1P38398 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
BRCA1P38398 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.76□□□□□ -1.33
BRCA1P38398 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
BRCA1P38398 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC6.76□□□□□ -1.33
BRCA1P38398 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
BRCA1P38398 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC6.76□□□□□ -1.33
BRCA1P38398 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC6.76□□□□□ -1.33
BRCA1P38398 AL161722.1-201ENST00000446972 1032 ntBASIC6.76□□□□□ -1.33
BRCA1P38398 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC6.76□□□□□ -1.33
BRCA1P38398 KRTAP5-14P-201ENST00000502328 121 ntBASIC6.76□□□□□ -1.33
BRCA1P38398 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC6.76□□□□□ -1.33
BRCA1P38398 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC6.76□□□□□ -1.33
BRCA1P38398 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC6.76□□□□□ -1.33
BRCA1P38398 AC073575.2-201ENST00000614212 627 ntBASIC6.76□□□□□ -1.33
BRCA1P38398 MCM8-205ENST00000610722 7486 ntAPPRIS P4 TSL 1 (best) BASIC6.76□□□□□ -1.33
BRCA1P38398 KIAA1217-202ENST00000376451 7383 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
BRCA1P38398 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
BRCA1P38398 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
BRCA1P38398 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC6.76□□□□□ -1.33
BRCA1P38398 AL589993.1-201ENST00000407450 2524 ntBASIC6.76□□□□□ -1.33
BRCA1P38398 OLMALINC-203ENST00000641087 3779 ntBASIC6.76□□□□□ -1.33
BRCA1P38398 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
BRCA1P38398 AC005224.3-201ENST00000584683 2140 ntBASIC6.76□□□□□ -1.33
BRCA1P38398 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC6.76□□□□□ -1.33
BRCA1P38398 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC6.76□□□□□ -1.33
BRCA1P38398 BRD7P6-201ENST00000431406 1860 ntBASIC6.76□□□□□ -1.33
BRCA1P38398 AC005618.1-201ENST00000606901 3148 ntBASIC6.76□□□□□ -1.33
BRCA1P38398 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC6.76□□□□□ -1.33
BRCA1P38398 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
BRCA1P38398 MEF2C-210ENST00000506554 3469 ntTSL 5 BASIC6.75□□□□□ -1.33
BRCA1P38398 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC6.75□□□□□ -1.33
BRCA1P38398 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC6.75□□□□□ -1.33
BRCA1P38398 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
BRCA1P38398 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC6.75□□□□□ -1.33
BRCA1P38398 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
BRCA1P38398 RNA5SP487-201ENST00000410186 122 ntBASIC6.75□□□□□ -1.33
BRCA1P38398 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.75□□□□□ -1.33
BRCA1P38398 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC6.75□□□□□ -1.33
BRCA1P38398 RPL7L1P3-201ENST00000455249 689 ntBASIC6.75□□□□□ -1.33
BRCA1P38398 AC097484.1-201ENST00000471148 389 ntBASIC6.75□□□□□ -1.33
BRCA1P38398 AP002373.2-201ENST00000541631 1060 ntBASIC6.75□□□□□ -1.33
BRCA1P38398 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
BRCA1P38398 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC6.75□□□□□ -1.33
BRCA1P38398 MIR4691-201ENST00000583764 85 ntBASIC6.75□□□□□ -1.33
BRCA1P38398 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC6.75□□□□□ -1.33
BRCA1P38398 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
BRCA1P38398 AL162456.1-201ENST00000634535 2006 ntBASIC6.75□□□□□ -1.33
BRCA1P38398 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
BRCA1P38398 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
BRCA1P38398 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC6.75□□□□□ -1.33
BRCA1P38398 CNR1-202ENST00000369499 5549 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
BRCA1P38398 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC6.75□□□□□ -1.33
BRCA1P38398 PWAR1-201ENST00000624188 2414 ntBASIC6.75□□□□□ -1.33
BRCA1P38398 AC005034.3-201ENST00000604845 1747 ntBASIC6.75□□□□□ -1.33
BRCA1P38398 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC6.75□□□□□ -1.33
BRCA1P38398 AL353763.1-201ENST00000624467 1628 ntBASIC6.75□□□□□ -1.33
BRCA1P38398 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC6.75□□□□□ -1.33
BRCA1P38398 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
BRCA1P38398 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
BRCA1P38398 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
BRCA1P38398 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC6.75□□□□□ -1.33
BRCA1P38398 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
BRCA1P38398 CYP27C1-201ENST00000335247 4401 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
BRCA1P38398 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
BRCA1P38398 AL449283.1-201ENST00000602631 3403 ntBASIC6.75□□□□□ -1.33
BRCA1P38398 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC6.75□□□□□ -1.33
BRCA1P38398 MGAT2P2-201ENST00000427194 797 ntBASIC6.75□□□□□ -1.33
BRCA1P38398 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC6.75□□□□□ -1.33
BRCA1P38398 AL513533.1-201ENST00000453728 415 ntBASIC6.75□□□□□ -1.33
BRCA1P38398 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC6.75□□□□□ -1.33
BRCA1P38398 OR7H2P-201ENST00000513483 306 ntBASIC6.75□□□□□ -1.33
BRCA1P38398 OR5AN2P-201ENST00000534535 896 ntBASIC6.75□□□□□ -1.33
BRCA1P38398 USP29-201ENST00000254181 3705 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
BRCA1P38398 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
BRCA1P38398 SLFN13-204ENST00000526861 6004 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
BRCA1P38398 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 169.2 ms