Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC122688.1-201ENST00000541494 223 ntBASIC7.36□□□□□ -1.23
COL3A1P02461 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC7.36□□□□□ -1.23
COL3A1P02461 BLZF2P-201ENST00000553776 1130 ntBASIC7.36□□□□□ -1.23
COL3A1P02461 OR11H3P-201ENST00000554547 982 ntBASIC7.36□□□□□ -1.23
COL3A1P02461 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC7.36□□□□□ -1.23
COL3A1P02461 AC090953.1-201ENST00000604305 1092 ntBASIC7.36□□□□□ -1.23
COL3A1P02461 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL3A1P02461 AC135068.5-201ENST00000624197 983 ntBASIC7.36□□□□□ -1.23
COL3A1P02461 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL3A1P02461 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL3A1P02461 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL3A1P02461 RARSP1-201ENST00000542842 1418 ntBASIC7.36□□□□□ -1.23
COL3A1P02461 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL3A1P02461 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL3A1P02461 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL3A1P02461 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL3A1P02461 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL3A1P02461 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC7.36□□□□□ -1.23
COL3A1P02461 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC7.36□□□□□ -1.23
COL3A1P02461 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC7.36□□□□□ -1.23
COL3A1P02461 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
COL3A1P02461 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL3A1P02461 CASC19-248ENST00000641674 1356 ntBASIC7.36□□□□□ -1.23
COL3A1P02461 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
COL3A1P02461 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC7.36□□□□□ -1.23
COL3A1P02461 DPPA2P3-201ENST00000411853 655 ntBASIC7.36□□□□□ -1.23
COL3A1P02461 AL390774.1-201ENST00000411924 246 ntBASIC7.36□□□□□ -1.23
COL3A1P02461 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC7.36□□□□□ -1.23
COL3A1P02461 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC7.36□□□□□ -1.23
COL3A1P02461 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC7.36□□□□□ -1.23
COL3A1P02461 AC110749.1-201ENST00000462007 357 ntBASIC7.36□□□□□ -1.23
COL3A1P02461 BX284632.1-201ENST00000478218 541 ntBASIC7.36□□□□□ -1.23
COL3A1P02461 RPL7P6-201ENST00000480903 738 ntBASIC7.36□□□□□ -1.23
COL3A1P02461 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC7.36□□□□□ -1.23
COL3A1P02461 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC7.36□□□□□ -1.23
COL3A1P02461 SMARCE1P3-201ENST00000553649 1231 ntBASIC7.36□□□□□ -1.23
COL3A1P02461 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC7.36□□□□□ -1.23
COL3A1P02461 BNIP3P32-201ENST00000600015 554 ntBASIC7.36□□□□□ -1.23
COL3A1P02461 AC073575.2-201ENST00000614212 627 ntBASIC7.36□□□□□ -1.23
COL3A1P02461 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC7.36□□□□□ -1.23
COL3A1P02461 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL3A1P02461 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL3A1P02461 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL3A1P02461 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL3A1P02461 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
COL3A1P02461 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC7.35□□□□□ -1.23
COL3A1P02461 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC7.35□□□□□ -1.23
COL3A1P02461 AC013268.3-201ENST00000262716 2324 ntBASIC7.35□□□□□ -1.23
COL3A1P02461 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
COL3A1P02461 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL3A1P02461 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL3A1P02461 OR4F13P-202ENST00000560066 2054 ntBASIC7.35□□□□□ -1.23
COL3A1P02461 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC7.35□□□□□ -1.23
COL3A1P02461 AL034546.1-201ENST00000623740 3693 ntBASIC7.35□□□□□ -1.23
COL3A1P02461 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL3A1P02461 CR788268.1-201ENST00000603931 1809 ntBASIC7.35□□□□□ -1.23
COL3A1P02461 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL3A1P02461 OR9K1P-201ENST00000326513 941 ntBASIC7.35□□□□□ -1.23
COL3A1P02461 OR4K12P-201ENST00000406538 961 ntBASIC7.35□□□□□ -1.23
COL3A1P02461 RNF10P1-201ENST00000418589 369 ntBASIC7.35□□□□□ -1.23
COL3A1P02461 SRSF1P1-201ENST00000424058 520 ntBASIC7.35□□□□□ -1.23
COL3A1P02461 SPRYD7P1-201ENST00000443861 570 ntBASIC7.35□□□□□ -1.23
COL3A1P02461 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC7.35□□□□□ -1.23
COL3A1P02461 EIF3LP3-201ENST00000495197 822 ntBASIC7.35□□□□□ -1.23
COL3A1P02461 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
COL3A1P02461 AC024558.1-201ENST00000505008 528 ntBASIC7.35□□□□□ -1.23
COL3A1P02461 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC7.35□□□□□ -1.23
COL3A1P02461 ACTR6P1-201ENST00000514311 1104 ntBASIC7.35□□□□□ -1.23
COL3A1P02461 GAPDHP62-201ENST00000515313 990 ntBASIC7.35□□□□□ -1.23
COL3A1P02461 AC078878.1-201ENST00000539832 958 ntBASIC7.35□□□□□ -1.23
COL3A1P02461 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC7.35□□□□□ -1.23
COL3A1P02461 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC7.35□□□□□ -1.23
COL3A1P02461 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC7.35□□□□□ -1.23
COL3A1P02461 METTL15-211ENST00000634762 718 ntTSL 5 BASIC7.35□□□□□ -1.23
COL3A1P02461 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
COL3A1P02461 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC7.35□□□□□ -1.23
COL3A1P02461 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC7.35□□□□□ -1.23
COL3A1P02461 Z83820.1-201ENST00000456978 1499 ntBASIC7.34□□□□□ -1.23
COL3A1P02461 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL3A1P02461 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC7.34□□□□□ -1.23
COL3A1P02461 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL3A1P02461 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
COL3A1P02461 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC7.34□□□□□ -1.23
COL3A1P02461 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
COL3A1P02461 UGT2B24P-201ENST00000514441 1597 ntBASIC7.34□□□□□ -1.23
COL3A1P02461 RNU1-77P-201ENST00000390868 162 ntBASIC7.34□□□□□ -1.23
COL3A1P02461 AL355433.1-201ENST00000422804 300 ntBASIC7.34□□□□□ -1.23
COL3A1P02461 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
COL3A1P02461 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC7.34□□□□□ -1.23
COL3A1P02461 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC7.34□□□□□ -1.23
COL3A1P02461 snoU13.29-201ENST00000459370 104 ntBASIC7.34□□□□□ -1.23
COL3A1P02461 AL049829.1-201ENST00000465411 156 ntBASIC7.34□□□□□ -1.23
COL3A1P02461 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC7.34□□□□□ -1.23
COL3A1P02461 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC7.34□□□□□ -1.23
COL3A1P02461 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC7.34□□□□□ -1.23
COL3A1P02461 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC7.34□□□□□ -1.23
COL3A1P02461 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC7.34□□□□□ -1.23
COL3A1P02461 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC7.34□□□□□ -1.23
COL3A1P02461 CDC42EP3P1-201ENST00000601004 764 ntBASIC7.34□□□□□ -1.23
COL3A1P02461 AP001267.4-201ENST00000602598 545 ntBASIC7.34□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms