Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AC139365.2-201ENST00000517972 253 ntBASIC9.79□□□□□ -0.84
CUX2O14529 MIR4270-201ENST00000581799 70 ntBASIC9.79□□□□□ -0.84
CUX2O14529 CYCSP1-201ENST00000604815 315 ntBASIC9.79□□□□□ -0.84
CUX2O14529 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC9.79□□□□□ -0.84
CUX2O14529 TEX41-254ENST00000626394 423 ntTSL 5 BASIC9.79□□□□□ -0.84
CUX2O14529 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC9.78□□□□□ -0.84
CUX2O14529 CYP19A1-202ENST00000396404 2388 ntAPPRIS P1 TSL 2 BASIC9.78□□□□□ -0.84
CUX2O14529 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
CUX2O14529 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
CUX2O14529 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
CUX2O14529 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
CUX2O14529 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC9.78□□□□□ -0.84
CUX2O14529 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
CUX2O14529 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC9.78□□□□□ -0.84
CUX2O14529 AC079741.1-201ENST00000321498 212 ntBASIC9.78□□□□□ -0.84
CUX2O14529 FAM32BP-201ENST00000344033 333 ntBASIC9.78□□□□□ -0.84
CUX2O14529 MIR133B-201ENST00000362210 119 ntBASIC9.78□□□□□ -0.84
CUX2O14529 RNU1-85P-201ENST00000364127 164 ntBASIC9.78□□□□□ -0.84
CUX2O14529 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC9.78□□□□□ -0.84
CUX2O14529 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC9.78□□□□□ -0.84
CUX2O14529 RPL23AP18-201ENST00000416139 468 ntBASIC9.78□□□□□ -0.84
CUX2O14529 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC9.78□□□□□ -0.84
CUX2O14529 AC004975.1-201ENST00000428733 208 ntBASIC9.78□□□□□ -0.84
CUX2O14529 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC9.78□□□□□ -0.84
CUX2O14529 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC9.78□□□□□ -0.84
CUX2O14529 AP002981.1-201ENST00000517692 975 ntBASIC9.78□□□□□ -0.84
CUX2O14529 HMGB1P23-201ENST00000518743 568 ntBASIC9.78□□□□□ -0.84
CUX2O14529 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC9.78□□□□□ -0.84
CUX2O14529 BLZF2P-201ENST00000553776 1130 ntBASIC9.78□□□□□ -0.84
CUX2O14529 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC9.78□□□□□ -0.84
CUX2O14529 GARSP1-201ENST00000570895 719 ntBASIC9.78□□□□□ -0.84
CUX2O14529 EIF3FP1-201ENST00000613970 806 ntBASIC9.78□□□□□ -0.84
CUX2O14529 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC9.78□□□□□ -0.84
CUX2O14529 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
CUX2O14529 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
CUX2O14529 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC9.78□□□□□ -0.84
CUX2O14529 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC9.78□□□□□ -0.84
CUX2O14529 CASC19-260ENST00000641828 2001 ntBASIC9.77□□□□□ -0.84
CUX2O14529 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC9.77□□□□□ -0.84
CUX2O14529 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.84
CUX2O14529 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC9.77□□□□□ -0.84
CUX2O14529 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC9.77□□□□□ -0.85
CUX2O14529 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC9.77□□□□□ -0.85
CUX2O14529 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
CUX2O14529 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC9.77□□□□□ -0.85
CUX2O14529 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
CUX2O14529 KIAA1217-202ENST00000376451 7383 ntTSL 1 (best) BASIC9.77□□□□□ -0.85
CUX2O14529 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
CUX2O14529 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC9.77□□□□□ -0.85
CUX2O14529 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC9.77□□□□□ -0.85
CUX2O14529 RN7SKP149-201ENST00000363008 344 ntBASIC9.77□□□□□ -0.85
CUX2O14529 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
CUX2O14529 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC9.77□□□□□ -0.85
CUX2O14529 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC9.77□□□□□ -0.85
CUX2O14529 AL022237.1-201ENST00000446663 358 ntBASIC9.77□□□□□ -0.85
CUX2O14529 KRTAP5-14P-201ENST00000502328 121 ntBASIC9.77□□□□□ -0.85
CUX2O14529 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC9.77□□□□□ -0.85
CUX2O14529 KCTD9P4-201ENST00000526766 1166 ntBASIC9.77□□□□□ -0.85
CUX2O14529 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC9.77□□□□□ -0.85
CUX2O14529 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC9.77□□□□□ -0.85
CUX2O14529 AC011447.4-201ENST00000587562 111 ntBASIC9.77□□□□□ -0.85
CUX2O14529 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC9.77□□□□□ -0.85
CUX2O14529 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.85
CUX2O14529 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
CUX2O14529 MAK-202ENST00000354489 3941 ntTSL 5 BASIC9.77□□□□□ -0.85
CUX2O14529 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC9.77□□□□□ -0.85
CUX2O14529 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
CUX2O14529 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
CUX2O14529 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
CUX2O14529 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
CUX2O14529 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC9.76□□□□□ -0.85
CUX2O14529 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC9.76□□□□□ -0.85
CUX2O14529 SNORA17.1-201ENST00000362945 126 ntBASIC9.76□□□□□ -0.85
CUX2O14529 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC9.76□□□□□ -0.85
CUX2O14529 NENFP1-201ENST00000419476 466 ntBASIC9.76□□□□□ -0.85
CUX2O14529 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC9.76□□□□□ -0.85
CUX2O14529 AC008072.1-201ENST00000434254 824 ntBASIC9.76□□□□□ -0.85
CUX2O14529 TRIM60P9Y-201ENST00000438459 816 ntBASIC9.76□□□□□ -0.85
CUX2O14529 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC9.76□□□□□ -0.85
CUX2O14529 TRIM60P11Y-201ENST00000445313 801 ntBASIC9.76□□□□□ -0.85
CUX2O14529 DUBR-205ENST00000495228 411 ntTSL 2 BASIC9.76□□□□□ -0.85
CUX2O14529 AC021678.3-201ENST00000517893 476 ntBASIC9.76□□□□□ -0.85
CUX2O14529 MAL2-208ENST00000523307 556 ntTSL 4 BASIC9.76□□□□□ -0.85
CUX2O14529 AC005000.1-201ENST00000536192 288 ntBASIC9.76□□□□□ -0.85
CUX2O14529 EDDM3DP-201ENST00000554692 434 ntBASIC9.76□□□□□ -0.85
CUX2O14529 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC9.76□□□□□ -0.85
CUX2O14529 MIR6780A-201ENST00000615089 68 ntBASIC9.76□□□□□ -0.85
CUX2O14529 AC006338.2-201ENST00000616864 791 ntBASIC9.76□□□□□ -0.85
CUX2O14529 AC112694.2-201ENST00000623697 768 ntBASIC9.76□□□□□ -0.85
CUX2O14529 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
CUX2O14529 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
CUX2O14529 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
CUX2O14529 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC9.76□□□□□ -0.85
CUX2O14529 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC9.76□□□□□ -0.85
CUX2O14529 PARP4P1-201ENST00000435945 2337 ntBASIC9.76□□□□□ -0.85
CUX2O14529 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
CUX2O14529 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC9.76□□□□□ -0.85
CUX2O14529 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC9.75□□□□□ -0.85
CUX2O14529 ZNF555-201ENST00000334241 8557 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.85
CUX2O14529 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC9.75□□□□□ -0.85
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms