Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 RPS26P41-201ENST00000450370 284 ntBASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 RPL7P6-201ENST00000480903 738 ntBASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 MIR4697-201ENST00000582977 78 ntBASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 AC087763.1-201ENST00000603391 286 ntBASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 AC004836.1-201ENST00000623032 634 ntBASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 GAPDHP42-201ENST00000406848 981 ntBASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 RPL35AP24-201ENST00000413846 330 ntBASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 AL162739.1-201ENST00000450606 307 ntBASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 RN7SKP98-201ENST00000517070 156 ntBASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 OR4A42P-201ENST00000531397 938 ntBASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
SHROOM4Q9ULL8 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 AC016251.2-201ENST00000623393 3089 ntBASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 AL159987.1-201ENST00000347911 293 ntBASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 MIR141-201ENST00000384975 95 ntBASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 AL772161.1-201ENST00000439130 476 ntBASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 RN7SL97P-201ENST00000486780 299 ntBASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 OR51A1P-201ENST00000511110 946 ntBASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 AC244502.2-201ENST00000543361 851 ntBASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 GSTP1P1-201ENST00000548078 319 ntBASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 MIR4646-201ENST00000580775 63 ntBASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 AL731566.2-201ENST00000618971 317 ntBASIC10.96□□□□□ -0.65
SHROOM4Q9ULL8 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC10.96□□□□□ -0.66
SHROOM4Q9ULL8 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
SHROOM4Q9ULL8 IMMTP1-201ENST00000435590 2219 ntBASIC10.96□□□□□ -0.66
SHROOM4Q9ULL8 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC10.96□□□□□ -0.66
SHROOM4Q9ULL8 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
SHROOM4Q9ULL8 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
SHROOM4Q9ULL8 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 GABARAPL3-201ENST00000412799 354 ntBASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 EIF2S2P3-201ENST00000428356 999 ntBASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 AL731534.1-201ENST00000434711 269 ntBASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 RPL23AP40-201ENST00000487630 390 ntBASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 AP001922.4-201ENST00000526967 290 ntBASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 AL161912.3-201ENST00000605404 628 ntBASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 AC145423.1-201ENST00000605712 336 ntBASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 AC126915.2-201ENST00000610957 190 ntBASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 AP001885.1-201ENST00000621658 558 ntBASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 AC232271.1-201ENST00000602455 2715 ntBASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 AC079753.1-201ENST00000623243 3868 ntBASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC10.95□□□□□ -0.66
SHROOM4Q9ULL8 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms