Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TREX1Q9NSU2 FO681491.1-202ENST00000623392 737 ntBASIC5.7□□□□□ -1.5
TREX1Q9NSU2 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.7□□□□□ -1.5
TREX1Q9NSU2 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
TREX1Q9NSU2 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TREX1Q9NSU2 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
TREX1Q9NSU2 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.7□□□□□ -1.5
TREX1Q9NSU2 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TREX1Q9NSU2 AL034546.1-201ENST00000623740 3693 ntBASIC5.7□□□□□ -1.5
TREX1Q9NSU2 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TREX1Q9NSU2 AC015799.1-201ENST00000622996 3122 ntBASIC5.7□□□□□ -1.5
TREX1Q9NSU2 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 WDR95P-201ENST00000425638 1542 ntBASIC5.69□□□□□ -1.5
TREX1Q9NSU2 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 AL121886.1-201ENST00000358609 435 ntBASIC5.69□□□□□ -1.5
TREX1Q9NSU2 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 RNA5SP453-201ENST00000362503 119 ntBASIC5.69□□□□□ -1.5
TREX1Q9NSU2 RN7SKP185-201ENST00000362813 326 ntBASIC5.69□□□□□ -1.5
TREX1Q9NSU2 RNA5SP433-201ENST00000364491 114 ntBASIC5.69□□□□□ -1.5
TREX1Q9NSU2 RNA5SP30-201ENST00000365552 115 ntBASIC5.69□□□□□ -1.5
TREX1Q9NSU2 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 AL158827.1-201ENST00000416300 391 ntBASIC5.69□□□□□ -1.5
TREX1Q9NSU2 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 RN7SKP253-201ENST00000516424 309 ntBASIC5.69□□□□□ -1.5
TREX1Q9NSU2 IGLV3-24-201ENST00000517477 197 ntBASIC5.69□□□□□ -1.5
TREX1Q9NSU2 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 DPPA2P4-201ENST00000563717 878 ntBASIC5.69□□□□□ -1.5
TREX1Q9NSU2 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 AC007842.1-201ENST00000597336 2039 ntBASIC5.69□□□□□ -1.5
TREX1Q9NSU2 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TREX1Q9NSU2 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 SNORA64.1-201ENST00000362600 132 ntBASIC5.68□□□□□ -1.5
TREX1Q9NSU2 RN7SKP186-201ENST00000365371 303 ntBASIC5.68□□□□□ -1.5
TREX1Q9NSU2 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 RN7SL168P-201ENST00000463821 279 ntBASIC5.68□□□□□ -1.5
TREX1Q9NSU2 RPS3AP15-201ENST00000483874 781 ntBASIC5.68□□□□□ -1.5
TREX1Q9NSU2 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 NENFP3-201ENST00000503735 313 ntBASIC5.68□□□□□ -1.5
TREX1Q9NSU2 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 BCAS2P1-201ENST00000528022 632 ntBASIC5.68□□□□□ -1.5
TREX1Q9NSU2 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 AC090607.5-201ENST00000615692 224 ntBASIC5.68□□□□□ -1.5
TREX1Q9NSU2 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 AP001153.1-201ENST00000641024 338 ntBASIC5.68□□□□□ -1.5
TREX1Q9NSU2 OR8G3P-202ENST00000641572 1255 ntBASIC5.68□□□□□ -1.5
TREX1Q9NSU2 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
TREX1Q9NSU2 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms