Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 NRXN1-206ENST00000402717 2508 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AC015871.3-201ENST00000618835 2261 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 NLRC4-204ENST00000404025 3581 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 ZNF677-206ENST00000598513 3497 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 TMCC1P1-201ENST00000518897 1980 ntBASIC5.86□□□□□ -1.47
CCDC140Q96MF4 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 AL031594.1-201ENST00000417123 1932 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC140Q96MF4 TSHR-201ENST00000298171 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 ZNF20-201ENST00000334213 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 SMAD5-AS1-201ENST00000297163 1816 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 OR6J1-201ENST00000540461 4165 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 PPP6C-201ENST00000373547 4118 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 LARGE-AS1-203ENST00000438159 2618 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 TTC23-202ENST00000394129 2505 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 SF3A3P1-201ENST00000446317 1477 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 CTAGE1-201ENST00000391403 4313 ntAPPRIS P2 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 CA10-204ENST00000570565 2276 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 IFT22-201ENST00000315322 1130 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 RNU6-433P-201ENST00000363216 104 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 RNA5SP483-201ENST00000363431 118 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 RGS8-203ENST00000367557 859 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 MIR575-201ENST00000385013 94 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 MIR498-201ENST00000385134 124 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 KCNAB1-202ENST00000389634 1119 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 GRXCR1-201ENST00000399770 991 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 UNC50-203ENST00000409347 1276 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 RNU2-22P-201ENST00000411266 212 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 RNU2-6P-201ENST00000411404 190 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC234782.4-201ENST00000417646 1048 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 FAM96B-201ENST00000422424 676 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AL355607.1-201ENST00000427745 295 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 CELF2-AS2-202ENST00000432370 1227 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 BMS1P19-201ENST00000433925 393 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AL596276.1-201ENST00000434465 418 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 B3GNT2P1-201ENST00000434960 952 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 UBE2FP3-201ENST00000436366 524 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 DNAJA1P6-201ENST00000437347 354 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 LINC00578-201ENST00000439009 542 ntTSL 4 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC239367.2-201ENST00000447309 705 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 RPL18AP17-201ENST00000455326 198 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 CHIAP1-201ENST00000456220 995 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC027673.1-201ENST00000456245 405 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 NF1P3-201ENST00000457709 450 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 FAM74A1-201ENST00000465257 623 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC011005.4-201ENST00000466717 535 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 RN7SL233P-201ENST00000469988 277 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC018639.1-201ENST00000492994 442 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 CLDND1-205ENST00000502288 560 ntTSL 4 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC026700.1-201ENST00000512074 544 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC022296.2-201ENST00000512424 202 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 SCARNA6.1-201ENST00000516989 238 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC008562.1-201ENST00000521763 330 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC018442.3-201ENST00000523025 183 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 CHCHD7-215ENST00000523061 557 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AF279873.1-201ENST00000523393 313 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 OR7E87P-201ENST00000532397 929 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AP002453.2-201ENST00000533503 320 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 OR7E1P-201ENST00000533891 958 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC084361.1-201ENST00000537730 607 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC069240.2-201ENST00000550242 609 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 NTS-203ENST00000551529 801 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 PTCSC3-201ENST00000556013 571 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC027020.1-202ENST00000557839 429 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC136944.5-201ENST00000573021 151 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 MIR4528-201ENST00000577763 90 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 RN7SL786P-201ENST00000579130 298 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC007136.1-201ENST00000589141 199 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 INTS6-AS1-218ENST00000598905 906 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AL596327.1-201ENST00000603629 213 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC091488.1-201ENST00000604239 660 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 TAS2R6P-201ENST00000605022 826 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC007684.1-201ENST00000609671 477 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC116651.1-201ENST00000609724 556 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AL391903.2-201ENST00000614532 247 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC027807.2-201ENST00000616099 408 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 AC243756.2-201ENST00000618406 463 ntBASIC5.85□□□□□ -1.47
CCDC140Q96MF4 RN7SL680P-201ENST00000620379 299 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms