Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AP004247.1-201ENST00000531556 1289 ntBASIC7.29□□□□□ -1.24
SOX4Q06945 AHI1-217ENST00000534469 680 ntTSL 3 BASIC7.29□□□□□ -1.24
SOX4Q06945 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC7.29□□□□□ -1.24
SOX4Q06945 OR5BK1P-201ENST00000550421 823 ntBASIC7.29□□□□□ -1.24
SOX4Q06945 AC087883.1-201ENST00000551882 391 ntBASIC7.29□□□□□ -1.24
SOX4Q06945 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC7.29□□□□□ -1.24
SOX4Q06945 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC7.29□□□□□ -1.24
SOX4Q06945 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC7.29□□□□□ -1.24
SOX4Q06945 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC7.29□□□□□ -1.24
SOX4Q06945 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC7.29□□□□□ -1.24
SOX4Q06945 AC091965.4-201ENST00000607691 587 ntBASIC7.29□□□□□ -1.24
SOX4Q06945 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SOX4Q06945 AC004241.2-201ENST00000614562 444 ntBASIC7.29□□□□□ -1.24
SOX4Q06945 AL354702.2-202ENST00000641481 890 ntBASIC7.29□□□□□ -1.24
SOX4Q06945 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
SOX4Q06945 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
SOX4Q06945 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC7.29□□□□□ -1.24
SOX4Q06945 TTTY2-201ENST00000417072 3168 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SOX4Q06945 TTTY2B-201ENST00000450591 3168 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SOX4Q06945 AF131215.2-201ENST00000531549 1710 ntBASIC7.29□□□□□ -1.24
SOX4Q06945 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SOX4Q06945 PYROXD1-201ENST00000240651 4055 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SOX4Q06945 AC006042.3-201ENST00000454684 1469 ntBASIC7.29□□□□□ -1.24
SOX4Q06945 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC7.29□□□□□ -1.24
SOX4Q06945 SLC9A4-201ENST00000295269 4138 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SOX4Q06945 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
SOX4Q06945 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SOX4Q06945 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SOX4Q06945 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SOX4Q06945 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC7.28□□□□□ -1.24
SOX4Q06945 DLG2-209ENST00000418306 3027 ntTSL 2 BASIC7.28□□□□□ -1.24
SOX4Q06945 AL034417.4-202ENST00000642135 2236 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
SOX4Q06945 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
SOX4Q06945 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC7.28□□□□□ -1.24
SOX4Q06945 PHACTR2-201ENST00000305766 1851 ntAPPRIS P3 TSL 2 BASIC7.28□□□□□ -1.24
SOX4Q06945 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
SOX4Q06945 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SOX4Q06945 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
SOX4Q06945 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC7.28□□□□□ -1.24
SOX4Q06945 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
SOX4Q06945 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
SOX4Q06945 MIR365B-201ENST00000362317 111 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 RNA5SP140-201ENST00000364524 92 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC7.28□□□□□ -1.24
SOX4Q06945 Y_RNA.560-201ENST00000384689 102 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 MTCO1P56-201ENST00000401674 224 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SOX4Q06945 CYCSP17-201ENST00000407870 315 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 AC098592.1-201ENST00000419352 333 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC7.28□□□□□ -1.24
SOX4Q06945 AC007563.3-201ENST00000433233 371 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 YWHAZP7-201ENST00000436906 631 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SOX4Q06945 AC233982.1-201ENST00000451247 436 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 AURKAPS1-201ENST00000451805 1212 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 AC099670.1-201ENST00000455141 783 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 AL109741.2-201ENST00000455561 343 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 AC004890.1-201ENST00000461005 181 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 RPSAP37-201ENST00000470913 821 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SOX4Q06945 AC044810.1-201ENST00000480271 711 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SOX4Q06945 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC7.28□□□□□ -1.24
SOX4Q06945 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
SOX4Q06945 AC091849.1-201ENST00000509920 121 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 CDC42P4-201ENST00000510507 563 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 AC091965.2-201ENST00000512324 613 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC7.28□□□□□ -1.24
SOX4Q06945 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC7.28□□□□□ -1.24
SOX4Q06945 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC7.28□□□□□ -1.24
SOX4Q06945 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC7.28□□□□□ -1.24
SOX4Q06945 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC7.28□□□□□ -1.24
SOX4Q06945 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC7.28□□□□□ -1.24
SOX4Q06945 FXNP1-201ENST00000555153 337 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC7.28□□□□□ -1.24
SOX4Q06945 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC7.28□□□□□ -1.24
SOX4Q06945 MIR212-201ENST00000586026 110 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC7.28□□□□□ -1.24
SOX4Q06945 CLPTM1LP1-201ENST00000604519 484 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 HNRNPA3P9-201ENST00000604913 979 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC7.28□□□□□ -1.24
SOX4Q06945 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC7.28□□□□□ -1.24
SOX4Q06945 LINC02035-201ENST00000610128 5476 ntBASIC7.28□□□□□ -1.24
SOX4Q06945 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
SOX4Q06945 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC7.28□□□□□ -1.24
SOX4Q06945 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC7.28□□□□□ -1.24
SOX4Q06945 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC7.28□□□□□ -1.24
SOX4Q06945 TMBIM6-202ENST00000395006 2598 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
SOX4Q06945 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC7.28□□□□□ -1.24
SOX4Q06945 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC7.28□□□□□ -1.24
SOX4Q06945 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC7.28□□□□□ -1.24
SOX4Q06945 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
SOX4Q06945 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
SOX4Q06945 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC7.28□□□□□ -1.24
SOX4Q06945 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
SOX4Q06945 SPARCL1-205ENST00000503414 2520 ntTSL 2 BASIC7.28□□□□□ -1.24
SOX4Q06945 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC7.28□□□□□ -1.24
SOX4Q06945 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC7.28□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms