Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC5.51□□□□□ -1.53
SOX3P41225 SETP3-201ENST00000581726 813 ntBASIC5.51□□□□□ -1.53
SOX3P41225 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC5.51□□□□□ -1.53
SOX3P41225 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.51□□□□□ -1.53
SOX3P41225 AL136131.3-201ENST00000607600 188 ntBASIC5.51□□□□□ -1.53
SOX3P41225 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC5.51□□□□□ -1.53
SOX3P41225 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.51□□□□□ -1.53
SOX3P41225 NLRP3P1-201ENST00000622303 1785 ntBASIC5.51□□□□□ -1.53
SOX3P41225 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
SOX3P41225 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.51□□□□□ -1.53
SOX3P41225 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SOX3P41225 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.51□□□□□ -1.53
SOX3P41225 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.51□□□□□ -1.53
SOX3P41225 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SOX3P41225 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SOX3P41225 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
SOX3P41225 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SOX3P41225 AC027279.4-201ENST00000624371 2072 ntBASIC5.51□□□□□ -1.53
SOX3P41225 AC091305.2-201ENST00000624049 1576 ntBASIC5.5□□□□□ -1.53
SOX3P41225 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.5□□□□□ -1.53
SOX3P41225 AC109446.4-201ENST00000623235 2755 ntBASIC5.5□□□□□ -1.53
SOX3P41225 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC5.5□□□□□ -1.53
SOX3P41225 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SOX3P41225 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SOX3P41225 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SOX3P41225 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX3P41225 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC5.5□□□□□ -1.53
SOX3P41225 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX3P41225 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX3P41225 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
SOX3P41225 RNU6-316P-201ENST00000391027 107 ntBASIC5.5□□□□□ -1.53
SOX3P41225 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.5□□□□□ -1.53
SOX3P41225 AC117434.1-201ENST00000419971 836 ntBASIC5.5□□□□□ -1.53
SOX3P41225 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.5□□□□□ -1.53
SOX3P41225 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.5□□□□□ -1.53
SOX3P41225 NPM1P25-201ENST00000429734 854 ntBASIC5.5□□□□□ -1.53
SOX3P41225 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC5.5□□□□□ -1.53
SOX3P41225 AL389925.1-201ENST00000432257 728 ntBASIC5.5□□□□□ -1.53
SOX3P41225 KATNBL1P2-201ENST00000433311 835 ntBASIC5.5□□□□□ -1.53
SOX3P41225 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
SOX3P41225 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.5□□□□□ -1.53
SOX3P41225 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SOX3P41225 RPL23AP40-201ENST00000487630 390 ntBASIC5.5□□□□□ -1.53
SOX3P41225 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.5□□□□□ -1.53
SOX3P41225 CCDC11P1-201ENST00000503137 1162 ntBASIC5.5□□□□□ -1.53
SOX3P41225 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.5□□□□□ -1.53
SOX3P41225 TOMM22P4-201ENST00000511318 336 ntBASIC5.5□□□□□ -1.53
SOX3P41225 IGKV2-4-201ENST00000523070 340 ntBASIC5.5□□□□□ -1.53
SOX3P41225 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.5□□□□□ -1.53
SOX3P41225 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.5□□□□□ -1.53
SOX3P41225 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.5□□□□□ -1.53
SOX3P41225 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.5□□□□□ -1.53
SOX3P41225 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC5.5□□□□□ -1.53
SOX3P41225 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.5□□□□□ -1.53
SOX3P41225 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.5□□□□□ -1.53
SOX3P41225 AL049779.3-201ENST00000557141 606 ntBASIC5.5□□□□□ -1.53
SOX3P41225 NPM1P5-201ENST00000557228 838 ntBASIC5.5□□□□□ -1.53
SOX3P41225 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.5□□□□□ -1.53
SOX3P41225 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.5□□□□□ -1.53
SOX3P41225 AC100767.2-201ENST00000604840 693 ntBASIC5.5□□□□□ -1.53
SOX3P41225 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.5□□□□□ -1.53
SOX3P41225 AC107905.1-201ENST00000616204 426 ntBASIC5.5□□□□□ -1.53
SOX3P41225 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.5□□□□□ -1.53
SOX3P41225 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX3P41225 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
SOX3P41225 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX3P41225 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX3P41225 SAMM50P1-201ENST00000455403 1399 ntBASIC5.5□□□□□ -1.53
SOX3P41225 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SOX3P41225 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.5□□□□□ -1.53
SOX3P41225 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.5□□□□□ -1.53
SOX3P41225 AC027088.4-201ENST00000611559 1947 ntBASIC5.5□□□□□ -1.53
SOX3P41225 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.5□□□□□ -1.53
SOX3P41225 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC5.49□□□□□ -1.53
SOX3P41225 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SOX3P41225 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
SOX3P41225 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.49□□□□□ -1.53
SOX3P41225 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SOX3P41225 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SOX3P41225 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SOX3P41225 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.49□□□□□ -1.53
SOX3P41225 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SOX3P41225 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SOX3P41225 SELENOWP1-201ENST00000322792 252 ntBASIC5.49□□□□□ -1.53
SOX3P41225 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.49□□□□□ -1.53
SOX3P41225 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SOX3P41225 U3.10-201ENST00000364459 214 ntBASIC5.49□□□□□ -1.53
SOX3P41225 RNA5SP510-201ENST00000364697 99 ntBASIC5.49□□□□□ -1.53
SOX3P41225 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.49□□□□□ -1.53
SOX3P41225 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.49□□□□□ -1.53
SOX3P41225 MIR1203-201ENST00000408812 85 ntBASIC5.49□□□□□ -1.53
SOX3P41225 RN7SKP166-201ENST00000410812 305 ntBASIC5.49□□□□□ -1.53
SOX3P41225 KIF4CP-201ENST00000422742 1279 ntBASIC5.49□□□□□ -1.53
SOX3P41225 BX119904.3-201ENST00000428194 957 ntBASIC5.49□□□□□ -1.53
SOX3P41225 BX323845.3-201ENST00000428215 527 ntBASIC5.49□□□□□ -1.53
SOX3P41225 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.49□□□□□ -1.53
SOX3P41225 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.49□□□□□ -1.53
SOX3P41225 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.49□□□□□ -1.53
SOX3P41225 RPS7P3-201ENST00000443360 580 ntBASIC5.49□□□□□ -1.53
SOX3P41225 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms