Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.3
COL5A3P25940 AP004607.3-201ENST00000530354 3915 ntBASIC6.96□□□□□ -1.3
COL5A3P25940 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.3
COL5A3P25940 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC6.96□□□□□ -1.3
COL5A3P25940 FAR2P2-201ENST00000413041 594 ntBASIC6.96□□□□□ -1.3
COL5A3P25940 FAR2P4-202ENST00000425399 584 ntBASIC6.96□□□□□ -1.3
COL5A3P25940 VN1R21P-201ENST00000426703 765 ntBASIC6.96□□□□□ -1.3
COL5A3P25940 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC6.96□□□□□ -1.3
COL5A3P25940 RPL12P39-201ENST00000455456 496 ntBASIC6.96□□□□□ -1.3
COL5A3P25940 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.96□□□□□ -1.3
COL5A3P25940 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.96□□□□□ -1.3
COL5A3P25940 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC6.96□□□□□ -1.3
COL5A3P25940 RN7SKP253-201ENST00000516424 309 ntBASIC6.96□□□□□ -1.3
COL5A3P25940 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC6.96□□□□□ -1.3
COL5A3P25940 PMS2P3-207ENST00000529061 717 ntBASIC6.96□□□□□ -1.3
COL5A3P25940 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL5A3P25940 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC6.96□□□□□ -1.3
COL5A3P25940 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC6.96□□□□□ -1.3
COL5A3P25940 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC6.96□□□□□ -1.3
COL5A3P25940 AC006115.2-201ENST00000596823 202 ntBASIC6.96□□□□□ -1.3
COL5A3P25940 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC6.96□□□□□ -1.3
COL5A3P25940 EPPK1-202ENST00000615648 16002 ntAPPRIS P2 TSL 5 BASIC6.96□□□□□ -1.3
COL5A3P25940 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL5A3P25940 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL5A3P25940 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
COL5A3P25940 ZNF793-201ENST00000445217 6712 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
COL5A3P25940 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL5A3P25940 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC6.95□□□□□ -1.3
COL5A3P25940 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC6.95□□□□□ -1.3
COL5A3P25940 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL5A3P25940 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL5A3P25940 AC008124.1-201ENST00000609803 9730 ntBASIC6.95□□□□□ -1.3
COL5A3P25940 MRRF-207ENST00000373729 870 ntTSL 3 BASIC6.95□□□□□ -1.3
COL5A3P25940 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL5A3P25940 AC211486.3-201ENST00000412694 621 ntBASIC6.95□□□□□ -1.3
COL5A3P25940 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.95□□□□□ -1.3
COL5A3P25940 AC104837.2-201ENST00000427236 424 ntBASIC6.95□□□□□ -1.3
COL5A3P25940 AC096754.1-201ENST00000508904 818 ntBASIC6.95□□□□□ -1.3
COL5A3P25940 EIF3KP3-201ENST00000514461 639 ntBASIC6.95□□□□□ -1.3
COL5A3P25940 GSTP1P1-201ENST00000548078 319 ntBASIC6.95□□□□□ -1.3
COL5A3P25940 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC6.95□□□□□ -1.3
COL5A3P25940 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC6.95□□□□□ -1.3
COL5A3P25940 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC6.95□□□□□ -1.3
COL5A3P25940 AP000769.2-201ENST00000602344 396 ntBASIC6.95□□□□□ -1.3
COL5A3P25940 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL5A3P25940 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL5A3P25940 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL5A3P25940 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL5A3P25940 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL5A3P25940 AC002090.1-201ENST00000625000 2138 ntBASIC6.94□□□□□ -1.3
COL5A3P25940 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL5A3P25940 UTY-205ENST00000382896 6661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL5A3P25940 UTY-211ENST00000540140 6652 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL5A3P25940 UTY-214ENST00000617789 6682 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL5A3P25940 CAST-222ENST00000508579 1758 ntTSL 2 BASIC6.94□□□□□ -1.3
COL5A3P25940 STAMBP-201ENST00000339566 6277 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
COL5A3P25940 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL5A3P25940 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC6.94□□□□□ -1.3
COL5A3P25940 SLC5A1-204ENST00000543737 4752 ntTSL 2 BASIC6.94□□□□□ -1.3
COL5A3P25940 HSPD1P7-201ENST00000447985 1686 ntBASIC6.94□□□□□ -1.3
COL5A3P25940 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC6.94□□□□□ -1.3
COL5A3P25940 PCBP1-AS1-230ENST00000439670 2180 ntTSL 2 BASIC6.94□□□□□ -1.3
COL5A3P25940 MIR141-201ENST00000384975 95 ntBASIC6.94□□□□□ -1.3
COL5A3P25940 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC6.94□□□□□ -1.3
COL5A3P25940 AC092647.2-201ENST00000452998 253 ntBASIC6.94□□□□□ -1.3
COL5A3P25940 AZGP1P2-201ENST00000454506 345 ntBASIC6.94□□□□□ -1.3
COL5A3P25940 AC007686.1-201ENST00000488511 463 ntBASIC6.94□□□□□ -1.3
COL5A3P25940 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC6.94□□□□□ -1.3
COL5A3P25940 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
COL5A3P25940 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC6.94□□□□□ -1.3
COL5A3P25940 AC018552.1-201ENST00000562099 811 ntBASIC6.94□□□□□ -1.3
COL5A3P25940 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC6.94□□□□□ -1.3
COL5A3P25940 HIRAP1-201ENST00000605318 787 ntBASIC6.94□□□□□ -1.3
COL5A3P25940 CLIC5-201ENST00000185206 6023 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL5A3P25940 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
COL5A3P25940 AL589993.1-201ENST00000407450 2524 ntBASIC6.94□□□□□ -1.3
COL5A3P25940 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL5A3P25940 KPNA1-201ENST00000344337 6830 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL5A3P25940 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
COL5A3P25940 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL5A3P25940 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.93□□□□□ -1.3
COL5A3P25940 CRYBG3-201ENST00000389622 10729 ntAPPRIS P1 TSL 5 BASIC6.93□□□□□ -1.3
COL5A3P25940 TP53BP1-203ENST00000382044 10384 ntAPPRIS ALT2 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL5A3P25940 SNORA70H-201ENST00000383910 135 ntBASIC6.93□□□□□ -1.3
COL5A3P25940 SNORA70J-201ENST00000384182 135 ntBASIC6.93□□□□□ -1.3
COL5A3P25940 DNAJA1P4-201ENST00000406473 1166 ntBASIC6.93□□□□□ -1.3
COL5A3P25940 ATP6V1G1P7-201ENST00000415853 349 ntBASIC6.93□□□□□ -1.3
COL5A3P25940 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC6.93□□□□□ -1.3
COL5A3P25940 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC6.93□□□□□ -1.3
COL5A3P25940 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC6.93□□□□□ -1.3
COL5A3P25940 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC6.93□□□□□ -1.3
COL5A3P25940 AC011753.3-201ENST00000443436 406 ntBASIC6.93□□□□□ -1.3
COL5A3P25940 RPS29P22-201ENST00000472363 168 ntBASIC6.93□□□□□ -1.3
COL5A3P25940 MTND6P2-201ENST00000512226 524 ntBASIC6.93□□□□□ -1.3
COL5A3P25940 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.93□□□□□ -1.3
COL5A3P25940 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC6.93□□□□□ -1.3
COL5A3P25940 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC6.93□□□□□ -1.3
COL5A3P25940 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.93□□□□□ -1.3
COL5A3P25940 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC6.93□□□□□ -1.3
COL5A3P25940 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC6.93□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms