Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RN7SL515P-201ENST00000463999 297 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC7.06□□□□□ -1.28
COL6A1P12109 RN7SL326P-201ENST00000477493 296 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 RN7SL705P-201ENST00000481678 294 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 RN7SL193P-201ENST00000491708 276 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC7.06□□□□□ -1.28
COL6A1P12109 PANCR-201ENST00000503456 493 ntTSL 5 BASIC7.06□□□□□ -1.28
COL6A1P12109 AC095057.1-201ENST00000507583 168 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC7.06□□□□□ -1.28
COL6A1P12109 CR383658.1-201ENST00000514609 734 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 RNA5SP362-201ENST00000516048 118 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 RNA5SP434-201ENST00000516647 121 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC7.06□□□□□ -1.28
COL6A1P12109 OLR1-210ENST00000544577 924 ntTSL 5 BASIC7.06□□□□□ -1.28
COL6A1P12109 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC7.06□□□□□ -1.28
COL6A1P12109 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC7.06□□□□□ -1.28
COL6A1P12109 AC005332.4-201ENST00000592752 579 ntBASIC7.06□□□□□ -1.28
COL6A1P12109 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC7.06□□□□□ -1.28
COL6A1P12109 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC7.06□□□□□ -1.28
COL6A1P12109 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
COL6A1P12109 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
COL6A1P12109 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
COL6A1P12109 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
COL6A1P12109 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC7.06□□□□□ -1.28
COL6A1P12109 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC7.06□□□□□ -1.28
COL6A1P12109 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL6A1P12109 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL6A1P12109 SPATA31B1P-201ENST00000434692 4016 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL6A1P12109 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL6A1P12109 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC7.05□□□□□ -1.28
COL6A1P12109 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC7.05□□□□□ -1.28
COL6A1P12109 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL6A1P12109 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL6A1P12109 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL6A1P12109 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC7.05□□□□□ -1.28
COL6A1P12109 HNRNPDP2-201ENST00000406475 478 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC7.05□□□□□ -1.28
COL6A1P12109 SDHDP6-201ENST00000414693 480 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC7.05□□□□□ -1.28
COL6A1P12109 AC005005.2-201ENST00000420779 380 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 XKRYP1-201ENST00000423438 492 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 RPS7P14-201ENST00000426405 583 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC7.05□□□□□ -1.28
COL6A1P12109 XKRYP2-201ENST00000432915 492 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 MRPS33P4-201ENST00000434892 317 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC7.05□□□□□ -1.28
COL6A1P12109 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC7.05□□□□□ -1.28
COL6A1P12109 IGKV1OR10-1-201ENST00000442306 329 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 MOB1AP2-201ENST00000446060 614 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC7.05□□□□□ -1.28
COL6A1P12109 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC7.05□□□□□ -1.28
COL6A1P12109 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC7.05□□□□□ -1.28
COL6A1P12109 AL445665.1-202ENST00000452436 324 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC7.05□□□□□ -1.28
COL6A1P12109 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
COL6A1P12109 IGKV1OR22-5-201ENST00000458718 354 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC7.05□□□□□ -1.28
COL6A1P12109 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC7.05□□□□□ -1.28
COL6A1P12109 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC7.05□□□□□ -1.28
COL6A1P12109 SCARNA18.1-201ENST00000516330 83 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC7.05□□□□□ -1.28
COL6A1P12109 AC025871.2-201ENST00000522589 511 ntTSL 3 BASIC7.05□□□□□ -1.28
COL6A1P12109 AC021451.1-201ENST00000523498 1129 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC7.05□□□□□ -1.28
COL6A1P12109 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC7.05□□□□□ -1.28
COL6A1P12109 MTATP6P15-201ENST00000527233 835 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 AP001804.2-201ENST00000533932 910 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 AC079600.1-201ENST00000550326 297 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 AL121839.1-201ENST00000556233 1185 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL6A1P12109 MIR4700-201ENST00000578311 74 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 MIR4509-3-201ENST00000578671 94 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 MIR4509-2-201ENST00000583920 94 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 AL450336.1-201ENST00000605180 586 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 RPL12P48-201ENST00000605620 304 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 AL450270.1-201ENST00000606160 391 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 AC004948.1-201ENST00000609858 672 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 MIR4509-1-201ENST00000618224 94 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 OR1N1-202ENST00000619659 939 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 CCT5-215ENST00000625723 135 ntTSL 5 BASIC7.05□□□□□ -1.28
COL6A1P12109 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL6A1P12109 AL442128.2-201ENST00000620246 1824 ntBASIC7.05□□□□□ -1.28
COL6A1P12109 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL6A1P12109 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC7.05□□□□□ -1.28
COL6A1P12109 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL6A1P12109 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL6A1P12109 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC7.05□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms