Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 SNORA11B-201ENST00000408175 129 ntBASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 AL663061.1-201ENST00000416625 580 ntBASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 AC245047.5-201ENST00000437312 556 ntBASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 GAPDHP16-201ENST00000448152 962 ntBASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 RPS3AP43-201ENST00000479743 781 ntBASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 AC021146.7-201ENST00000509604 775 ntBASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 AC093752.1-206ENST00000511823 336 ntBASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 AC119751.1-201ENST00000513357 765 ntBASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 MTATP6P1-201ENST00000514057 681 ntBASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 AC093524.1-201ENST00000564266 1094 ntBASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 AC111186.1-201ENST00000604684 130 ntBASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 AC093635.1-201ENST00000609028 555 ntBASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 AC092106.3-201ENST00000611308 722 ntBASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 COL6A4P1-202ENST00000487147 4317 ntBASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 XRCC6P5-201ENST00000435236 1795 ntBASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 IL1RAP-213ENST00000447382 4769 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
CSB-PGBD3P0DP91 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
CSB-PGBD3P0DP91 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC8.9□□□□□ -0.99
CSB-PGBD3P0DP91 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC8.9□□□□□ -0.99
CSB-PGBD3P0DP91 AC019072.1-201ENST00000604535 1551 ntBASIC8.9□□□□□ -0.99
CSB-PGBD3P0DP91 AC026464.2-201ENST00000567834 2421 ntBASIC8.9□□□□□ -0.99
CSB-PGBD3P0DP91 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC8.9□□□□□ -0.99
CSB-PGBD3P0DP91 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC8.9□□□□□ -0.99
CSB-PGBD3P0DP91 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC8.9□□□□□ -0.99
CSB-PGBD3P0DP91 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC8.9□□□□□ -0.99
CSB-PGBD3P0DP91 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC104966.1-201ENST00000467010 1464 ntBASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 PTPN3-203ENST00000412145 8765 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 MLIP-201ENST00000274897 1815 ntAPPRIS P3 TSL 2 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 CD101-202ENST00000369470 3324 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC008555.1-201ENST00000561778 2757 ntBASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 RN7SKP78-201ENST00000364711 318 ntBASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 RPL9P21-201ENST00000392269 505 ntBASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC004022.2-201ENST00000413824 193 ntBASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AL929472.1-201ENST00000417484 429 ntBASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 BTF3P9-201ENST00000418784 283 ntBASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 FAM96B-201ENST00000422424 676 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC239367.3-201ENST00000428996 814 ntBASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 HMGB1P7-201ENST00000450921 612 ntBASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 MTCO2P32-201ENST00000514865 403 ntBASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC092865.1-201ENST00000544395 1023 ntBASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC090115.2-201ENST00000548060 883 ntBASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC002519.2-203ENST00000567043 837 ntBASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AL357140.4-201ENST00000636827 412 ntBASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AC007671.2-201ENST00000637344 619 ntBASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 CD200R1-202ENST00000308611 2299 ntAPPRIS P4 TSL 1 (best) BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC8.89□□□□□ -0.99
CSB-PGBD3P0DP91 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC8.88□□□□□ -0.99
CSB-PGBD3P0DP91 AL049634.1-201ENST00000453770 1720 ntBASIC8.88□□□□□ -0.99
CSB-PGBD3P0DP91 WDR89-202ENST00000394942 2993 ntAPPRIS P1 TSL 5 BASIC8.88□□□□□ -0.99
CSB-PGBD3P0DP91 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
CSB-PGBD3P0DP91 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC8.88□□□□□ -0.99
CSB-PGBD3P0DP91 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
CSB-PGBD3P0DP91 FGG-205ENST00000407946 1636 ntTSL 5 BASIC8.88□□□□□ -0.99
CSB-PGBD3P0DP91 CDY7P-201ENST00000429883 1604 ntBASIC8.88□□□□□ -0.99
CSB-PGBD3P0DP91 CLCC1-203ENST00000356970 4803 ntAPPRIS ALT2 TSL 5 BASIC8.88□□□□□ -0.99
CSB-PGBD3P0DP91 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
CSB-PGBD3P0DP91 AC010132.2-201ENST00000295493 1043 ntBASIC8.88□□□□□ -0.99
CSB-PGBD3P0DP91 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC8.88□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 344.3 ms