Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RFPL4AP3-201ENST00000515267 345 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 MINOS1P4-201ENST00000515470 318 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 RN7SKP11-201ENST00000517018 287 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC5.65□□□□□ -1.5
HOXA3O43365 AP005902.2-201ENST00000518393 307 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXA3O43365 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC5.65□□□□□ -1.5
HOXA3O43365 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXA3O43365 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
HOXA3O43365 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC5.65□□□□□ -1.5
HOXA3O43365 AC078955.1-201ENST00000547123 882 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXA3O43365 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXA3O43365 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC5.65□□□□□ -1.5
HOXA3O43365 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HOXA3O43365 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXA3O43365 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXA3O43365 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXA3O43365 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXA3O43365 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC5.65□□□□□ -1.5
HOXA3O43365 EIF4A3P1-201ENST00000578499 647 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 EIF4A2P1-201ENST00000587313 1063 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC5.65□□□□□ -1.5
HOXA3O43365 AL031985.2-201ENST00000600955 480 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 AL355333.1-201ENST00000605632 279 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 AC087752.4-201ENST00000605911 462 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 RN7SKP299-201ENST00000606679 301 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC5.65□□□□□ -1.5
HOXA3O43365 AC104184.1-201ENST00000607513 721 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 AC063962.1-201ENST00000608199 521 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 AC019131.2-201ENST00000609071 870 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 MIR6780B-201ENST00000610307 79 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 AC073114.1-201ENST00000612027 490 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 AC090246.1-201ENST00000616499 426 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 MIR6849-201ENST00000618543 69 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 VN1R7P-201ENST00000619242 903 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC5.65□□□□□ -1.5
HOXA3O43365 AC005858.3-201ENST00000624756 589 ntBASIC5.65□□□□□ -1.5
HOXA3O43365 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
HOXA3O43365 NBPF14-201ENST00000581201 2931 ntTSL 5 BASIC5.65□□□□□ -1.51
HOXA3O43365 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC5.65□□□□□ -1.51
HOXA3O43365 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
HOXA3O43365 ADH4-212ENST00000629236 1974 ntTSL 5 BASIC5.65□□□□□ -1.51
HOXA3O43365 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC5.65□□□□□ -1.51
HOXA3O43365 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
HOXA3O43365 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
HOXA3O43365 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
HOXA3O43365 AC007012.2-201ENST00000623206 1676 ntBASIC5.65□□□□□ -1.51
HOXA3O43365 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC5.65□□□□□ -1.51
HOXA3O43365 AC000367.1-201ENST00000452711 1766 ntBASIC5.65□□□□□ -1.51
HOXA3O43365 TRIM42-201ENST00000286349 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
HOXA3O43365 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC5.65□□□□□ -1.51
HOXA3O43365 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXA3O43365 INPP4B-212ENST00000507861 1506 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXA3O43365 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 IARS-205ENST00000443024 4341 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXA3O43365 AC095038.1-201ENST00000429248 1591 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 KARSP2-201ENST00000415696 1639 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 GTF2H3-212ENST00000543341 3329 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 NBEA-202ENST00000379922 3794 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 LINC02535-201ENST00000455071 2513 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXA3O43365 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXA3O43365 snoZ40.1-201ENST00000364540 72 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 RN7SKP189-201ENST00000365042 330 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXA3O43365 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 RNA5SP105-201ENST00000391123 113 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 AL590084.2-201ENST00000401481 382 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 AL079342.2-201ENST00000403367 482 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 AL359715.1-201ENST00000404330 555 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 RN7SKP166-201ENST00000410812 305 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXA3O43365 AC098592.1-201ENST00000419352 333 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 OR5BE1P-201ENST00000425977 939 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC5.64□□□□□ -1.51
HOXA3O43365 AC129850.1-201ENST00000436203 508 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 MYL6P3-201ENST00000436904 432 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXA3O43365 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXA3O43365 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXA3O43365 GAPDHP16-201ENST00000448152 962 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 VN1R32P-201ENST00000452234 905 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 RPL12P26-201ENST00000452430 487 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
HOXA3O43365 RPS26P11-201ENST00000463445 348 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC5.64□□□□□ -1.51
HOXA3O43365 RPS26P6-201ENST00000475156 348 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
HOXA3O43365 RN7SL649P-201ENST00000496974 275 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 PRELID3BP7-201ENST00000503606 469 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC5.64□□□□□ -1.51
HOXA3O43365 PRELID3BP4-201ENST00000515476 571 ntBASIC5.64□□□□□ -1.51
HOXA3O43365 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms