Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 AL049779.2-201ENST00000553847 315 ntBASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
SHROOM4Q9ULL8 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 MRAP-202ENST00000339944 440 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 RNU1-106P-201ENST00000384382 164 ntBASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 AL590762.4-201ENST00000425885 253 ntBASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 RAB28P2-201ENST00000454299 641 ntBASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 CYCSP1-201ENST00000604815 315 ntBASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 IPO5-229ENST00000631030 192 ntTSL 5 BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
SHROOM4Q9ULL8 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 RNA5SP131-201ENST00000365452 119 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 AL121578.1-201ENST00000428051 892 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 OR52B5P-201ENST00000435337 951 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 RN7SL352P-201ENST00000466002 277 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 BX284632.1-201ENST00000478218 541 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 AC147055.3-201ENST00000510547 851 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 AC004890.3-201ENST00000605566 1095 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 OR52B5P-202ENST00000641118 1110 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 GSTCD-201ENST00000360505 2154 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 GTF2IP4-201ENST00000453092 2054 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 AL139128.1-201ENST00000413921 941 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 SMC4P1-201ENST00000414479 527 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 EIF4A1P7-201ENST00000421800 1220 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 AL606490.8-201ENST00000441624 319 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 AZGP1P2-201ENST00000454506 345 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 AC004129.2-201ENST00000457229 287 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 RPL7P39-201ENST00000481157 744 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 AC009120.1-201ENST00000493458 473 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 AC139365.2-201ENST00000517972 253 ntBASIC11□□□□□ -0.65
SHROOM4Q9ULL8 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC11□□□□□ -0.65
SHROOM4Q9ULL8 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 API5-210ENST00000534600 1760 ntTSL 5 BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 CD86-204ENST00000469710 1604 ntTSL 2 BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 RPS26P13-201ENST00000419030 330 ntBASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 SRSF1P1-201ENST00000424058 520 ntBASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 AURKAPS1-201ENST00000451805 1212 ntBASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 RN7SKP288-201ENST00000516227 268 ntBASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 MIR4436B2-201ENST00000581415 91 ntBASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 MIR4436B1-201ENST00000583272 91 ntBASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC10.99□□□□□ -0.65
SHROOM4Q9ULL8 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC10.98□□□□□ -0.65
SHROOM4Q9ULL8 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC10.98□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms