Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CXADRP3-202ENST00000617265 1100 ntBASIC5.92□□□□□ -1.46
VMP1Q96GC9 RNA5SP439-201ENST00000617595 124 ntBASIC5.92□□□□□ -1.46
VMP1Q96GC9 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.92□□□□□ -1.46
VMP1Q96GC9 MIR6806-201ENST00000622141 64 ntBASIC5.92□□□□□ -1.46
VMP1Q96GC9 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC5.92□□□□□ -1.46
VMP1Q96GC9 CASC19-274ENST00000642018 970 ntBASIC5.92□□□□□ -1.46
VMP1Q96GC9 OR7E91P-202ENST00000642062 1198 ntBASIC5.92□□□□□ -1.46
VMP1Q96GC9 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
VMP1Q96GC9 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
VMP1Q96GC9 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC5.92□□□□□ -1.46
VMP1Q96GC9 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC5.92□□□□□ -1.46
VMP1Q96GC9 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
VMP1Q96GC9 HSPA8P17-201ENST00000427029 1382 ntBASIC5.92□□□□□ -1.46
VMP1Q96GC9 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
VMP1Q96GC9 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
VMP1Q96GC9 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VMP1Q96GC9 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VMP1Q96GC9 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VMP1Q96GC9 SHQ1P1-201ENST00000437111 1544 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VMP1Q96GC9 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VMP1Q96GC9 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 RNU4-7P-201ENST00000364758 141 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AJ239321.1-201ENST00000424255 564 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 RPL5P2-201ENST00000429598 854 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC093166.3-201ENST00000448785 303 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 OR7E22P-201ENST00000478335 1035 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC112484.3-201ENST00000505910 329 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 RNA5SP441-201ENST00000516809 88 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 SEC11B-201ENST00000518383 499 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 NPIPB14P-203ENST00000532298 987 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC024405.1-201ENST00000532521 1042 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC008147.3-201ENST00000548666 354 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 RN7SL475P-201ENST00000583379 298 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC025857.2-201ENST00000602711 238 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 AL135999.3-201ENST00000610501 812 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 MIR7109-201ENST00000613748 65 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 AL133370.2-201ENST00000619934 439 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 AL591926.1-201ENST00000620542 217 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC000095.2-202ENST00000637415 154 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AP002512.4-202ENST00000641599 4530 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VMP1Q96GC9 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
VMP1Q96GC9 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VMP1Q96GC9 CASC19-260ENST00000641828 2001 ntBASIC5.91□□□□□ -1.46
VMP1Q96GC9 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VMP1Q96GC9 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VMP1Q96GC9 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VMP1Q96GC9 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
VMP1Q96GC9 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
VMP1Q96GC9 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
VMP1Q96GC9 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
VMP1Q96GC9 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
VMP1Q96GC9 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.9□□□□□ -1.46
VMP1Q96GC9 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.9□□□□□ -1.46
VMP1Q96GC9 AL121839.2-201ENST00000565058 6943 ntBASIC5.9□□□□□ -1.46
VMP1Q96GC9 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.9□□□□□ -1.46
VMP1Q96GC9 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.9□□□□□ -1.46
VMP1Q96GC9 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
VMP1Q96GC9 RN7SKP187-201ENST00000365536 330 ntBASIC5.9□□□□□ -1.46
VMP1Q96GC9 RBBP4P5-201ENST00000398583 1266 ntBASIC5.9□□□□□ -1.46
VMP1Q96GC9 GLUD1P9-201ENST00000420997 1173 ntBASIC5.9□□□□□ -1.46
VMP1Q96GC9 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC5.9□□□□□ -1.46
VMP1Q96GC9 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
VMP1Q96GC9 RPL12P16-201ENST00000431098 498 ntBASIC5.9□□□□□ -1.46
VMP1Q96GC9 AC112492.2-201ENST00000432774 1030 ntBASIC5.9□□□□□ -1.46
VMP1Q96GC9 SOCS5P1-201ENST00000440415 949 ntBASIC5.9□□□□□ -1.46
VMP1Q96GC9 AL645936.1-201ENST00000441979 518 ntBASIC5.9□□□□□ -1.46
VMP1Q96GC9 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC5.9□□□□□ -1.46
VMP1Q96GC9 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms