Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
RAE1P78406 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC5.8□□□□□ -1.48
RAE1P78406 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
RAE1P78406 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RAE1P78406 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RAE1P78406 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC5.8□□□□□ -1.48
RAE1P78406 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.8□□□□□ -1.48
RAE1P78406 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.8□□□□□ -1.48
RAE1P78406 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RAE1P78406 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
RAE1P78406 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.8□□□□□ -1.48
RAE1P78406 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.8□□□□□ -1.48
RAE1P78406 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
RAE1P78406 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
RAE1P78406 RPL23AP18-201ENST00000416139 468 ntBASIC5.8□□□□□ -1.48
RAE1P78406 RPS15AP30-201ENST00000420976 390 ntBASIC5.8□□□□□ -1.48
RAE1P78406 RPL7AP51-201ENST00000422016 760 ntBASIC5.8□□□□□ -1.48
RAE1P78406 AL606495.1-201ENST00000422100 813 ntBASIC5.8□□□□□ -1.48
RAE1P78406 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.8□□□□□ -1.48
RAE1P78406 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC5.8□□□□□ -1.48
RAE1P78406 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.8□□□□□ -1.48
RAE1P78406 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC5.8□□□□□ -1.48
RAE1P78406 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.8□□□□□ -1.48
RAE1P78406 OR3D1P-201ENST00000438288 955 ntBASIC5.8□□□□□ -1.48
RAE1P78406 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
RAE1P78406 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
RAE1P78406 AC097359.1-201ENST00000447946 463 ntBASIC5.8□□□□□ -1.48
RAE1P78406 CCRL1P1-201ENST00000449542 1053 ntBASIC5.8□□□□□ -1.48
RAE1P78406 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC5.8□□□□□ -1.48
RAE1P78406 AL162739.1-201ENST00000450606 307 ntBASIC5.8□□□□□ -1.48
RAE1P78406 AC098826.2-201ENST00000452011 651 ntBASIC5.8□□□□□ -1.48
RAE1P78406 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
RAE1P78406 RPL32P14-201ENST00000463196 378 ntBASIC5.8□□□□□ -1.48
RAE1P78406 SNX18P25-201ENST00000510539 758 ntBASIC5.8□□□□□ -1.48
RAE1P78406 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC5.8□□□□□ -1.48
RAE1P78406 RNA5SP116-201ENST00000516132 98 ntBASIC5.8□□□□□ -1.48
RAE1P78406 AC116917.1-201ENST00000520558 305 ntBASIC5.8□□□□□ -1.48
RAE1P78406 OR56A7P-201ENST00000524865 941 ntBASIC5.8□□□□□ -1.48
RAE1P78406 AP001000.1-201ENST00000526843 742 ntBASIC5.8□□□□□ -1.48
RAE1P78406 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC5.8□□□□□ -1.48
RAE1P78406 MTND1P24-201ENST00000552175 861 ntBASIC5.8□□□□□ -1.48
RAE1P78406 AC084759.1-201ENST00000561168 290 ntBASIC5.8□□□□□ -1.48
RAE1P78406 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.8□□□□□ -1.48
RAE1P78406 AC006116.5-201ENST00000591936 559 ntBASIC5.8□□□□□ -1.48
RAE1P78406 SMIM12P1-201ENST00000603004 274 ntBASIC5.8□□□□□ -1.48
RAE1P78406 AP004372.1-201ENST00000604842 844 ntBASIC5.8□□□□□ -1.48
RAE1P78406 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC5.8□□□□□ -1.48
RAE1P78406 AL080312.2-201ENST00000613001 630 ntBASIC5.8□□□□□ -1.48
RAE1P78406 AC008759.3-201ENST00000613300 508 ntBASIC5.8□□□□□ -1.48
RAE1P78406 AC069234.4-201ENST00000621276 412 ntBASIC5.8□□□□□ -1.48
RAE1P78406 AC073342.3-201ENST00000624211 193 ntBASIC5.8□□□□□ -1.48
RAE1P78406 AC087269.2-201ENST00000641764 975 ntBASIC5.8□□□□□ -1.48
RAE1P78406 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
RAE1P78406 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.8□□□□□ -1.48
RAE1P78406 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.8□□□□□ -1.48
RAE1P78406 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RAE1P78406 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RAE1P78406 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC5.8□□□□□ -1.48
RAE1P78406 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RAE1P78406 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
RAE1P78406 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RAE1P78406 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.79□□□□□ -1.48
RAE1P78406 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC5.79□□□□□ -1.48
RAE1P78406 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
RAE1P78406 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC5.79□□□□□ -1.48
RAE1P78406 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
RAE1P78406 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC5.79□□□□□ -1.48
RAE1P78406 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC5.79□□□□□ -1.48
RAE1P78406 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC5.79□□□□□ -1.48
RAE1P78406 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.79□□□□□ -1.48
RAE1P78406 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
RAE1P78406 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
RAE1P78406 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
RAE1P78406 RNU105B-201ENST00000364478 208 ntBASIC5.79□□□□□ -1.48
RAE1P78406 TINAG-203ENST00000370869 782 ntTSL 3 BASIC5.79□□□□□ -1.48
RAE1P78406 FPGT-TNNI3K-201ENST00000370893 1195 ntTSL 2 BASIC5.79□□□□□ -1.48
RAE1P78406 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
RAE1P78406 AC007068.1-201ENST00000396690 844 ntBASIC5.79□□□□□ -1.48
RAE1P78406 AL096800.1-201ENST00000405326 893 ntBASIC5.79□□□□□ -1.48
RAE1P78406 RN7SKP144-201ENST00000411108 279 ntBASIC5.79□□□□□ -1.48
RAE1P78406 AL096829.1-201ENST00000413677 457 ntBASIC5.79□□□□□ -1.48
RAE1P78406 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC5.79□□□□□ -1.48
RAE1P78406 AC106883.1-201ENST00000418805 562 ntBASIC5.79□□□□□ -1.48
RAE1P78406 Z82198.3-201ENST00000421145 199 ntBASIC5.79□□□□□ -1.48
RAE1P78406 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC5.79□□□□□ -1.48
RAE1P78406 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC5.79□□□□□ -1.48
RAE1P78406 CCNB1IP1P1-201ENST00000428976 839 ntBASIC5.79□□□□□ -1.48
RAE1P78406 AL365220.1-201ENST00000432923 399 ntBASIC5.79□□□□□ -1.48
RAE1P78406 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC5.79□□□□□ -1.48
RAE1P78406 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.79□□□□□ -1.48
RAE1P78406 RN7SL552P-201ENST00000462094 276 ntBASIC5.79□□□□□ -1.48
RAE1P78406 NPM1P29-201ENST00000483112 803 ntBASIC5.79□□□□□ -1.48
RAE1P78406 RPL12P30-201ENST00000488389 499 ntBASIC5.79□□□□□ -1.48
RAE1P78406 ABCA11P-202ENST00000504019 2110 ntBASIC5.79□□□□□ -1.48
RAE1P78406 HMGN1P17-201ENST00000513734 295 ntBASIC5.79□□□□□ -1.48
RAE1P78406 RN7SKP67-201ENST00000515905 235 ntBASIC5.79□□□□□ -1.48
RAE1P78406 AC104115.2-201ENST00000523026 687 ntBASIC5.79□□□□□ -1.48
RAE1P78406 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC5.79□□□□□ -1.48
RAE1P78406 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5.79□□□□□ -1.48
RAE1P78406 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 149.6 ms