Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA1P49639 AC074029.2-201ENST00000551045 634 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC5.1□□□□□ -1.59
HOXA1P49639 AC091304.5-201ENST00000568969 158 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 RN7SL689P-201ENST00000577215 297 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 AC090616.1-201ENST00000583895 447 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA1P49639 AC107993.1-201ENST00000591343 684 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 AC010139.1-201ENST00000596963 445 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA1P49639 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA1P49639 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC5.1□□□□□ -1.59
HOXA1P49639 PPATP2-201ENST00000605635 508 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 AC139792.1-201ENST00000607051 647 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 AL021368.3-201ENST00000607119 578 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 AL008723.3-201ENST00000608926 449 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA1P49639 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 AL121985.3-201ENST00000620690 523 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 AC097372.4-201ENST00000625025 466 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA1P49639 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA1P49639 AL034546.1-201ENST00000623740 3693 ntBASIC5.1□□□□□ -1.59
HOXA1P49639 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA1P49639 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HOXA1P49639 AC021242.1-201ENST00000507315 2035 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.09□□□□□ -1.59
HOXA1P49639 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HOXA1P49639 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.09□□□□□ -1.59
HOXA1P49639 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HOXA1P49639 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
HOXA1P49639 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
HOXA1P49639 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
HOXA1P49639 AC087565.3-202ENST00000642085 1603 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 AC125238.2-201ENST00000430003 1440 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
HOXA1P49639 CCNT2P1-201ENST00000423082 1315 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
HOXA1P49639 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HOXA1P49639 OR4F21-201ENST00000320901 995 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
HOXA1P49639 RNU4-44P-201ENST00000363050 141 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 RNA5SP382-201ENST00000363355 112 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 AC074375.1-201ENST00000372993 192 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
HOXA1P49639 MIR433-201ENST00000384837 93 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 TRAV22-201ENST00000390450 464 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
HOXA1P49639 RAB5CP1-201ENST00000395972 580 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 VIM2P-201ENST00000402383 1294 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 MORN2-202ENST00000409077 465 ntTSL 5 BASIC5.09□□□□□ -1.59
HOXA1P49639 AC024937.2-201ENST00000411669 1242 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC5.09□□□□□ -1.59
HOXA1P49639 OR13Z1P-201ENST00000416141 834 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HOXA1P49639 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.09□□□□□ -1.59
HOXA1P49639 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.09□□□□□ -1.59
HOXA1P49639 AL157884.1-201ENST00000424561 454 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 NPM1P26-201ENST00000426339 738 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.09□□□□□ -1.59
HOXA1P49639 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.09□□□□□ -1.59
HOXA1P49639 RPS19P6-201ENST00000441327 433 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 RPSAP40-201ENST00000442343 891 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC5.09□□□□□ -1.59
HOXA1P49639 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.09□□□□□ -1.59
HOXA1P49639 AC006026.3-201ENST00000454029 143 ntTSL 3 BASIC5.09□□□□□ -1.59
HOXA1P49639 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC5.09□□□□□ -1.59
HOXA1P49639 UOX-201ENST00000471089 899 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 AC135999.1-201ENST00000478962 479 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 PCNAP1-201ENST00000505363 709 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 AL158068.2-201ENST00000510632 563 ntTSL 4 BASIC5.09□□□□□ -1.59
HOXA1P49639 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC5.09□□□□□ -1.59
HOXA1P49639 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.09□□□□□ -1.59
HOXA1P49639 AC117525.1-201ENST00000515228 503 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 TPT1-AS1-209ENST00000520585 818 ntTSL 5 BASIC5.09□□□□□ -1.59
HOXA1P49639 AC091096.2-201ENST00000523284 587 ntTSL 3 BASIC5.09□□□□□ -1.59
HOXA1P49639 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC5.09□□□□□ -1.59
HOXA1P49639 AP003102.1-201ENST00000525638 661 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC5.09□□□□□ -1.59
HOXA1P49639 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC5.09□□□□□ -1.59
HOXA1P49639 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HOXA1P49639 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC5.09□□□□□ -1.59
HOXA1P49639 AL390726.5-202ENST00000564800 256 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC5.09□□□□□ -1.59
HOXA1P49639 RN7SL426P-201ENST00000579106 295 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 RN7SL657P-201ENST00000582431 293 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC5.09□□□□□ -1.59
HOXA1P49639 OR1AB1P-201ENST00000585564 761 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC5.09□□□□□ -1.59
HOXA1P49639 DNAJC19P3-201ENST00000594491 331 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 AC245052.7-201ENST00000601161 359 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 AL031429.2-201ENST00000602605 649 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 AC012175.1-201ENST00000603755 531 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 BNIP3P31-201ENST00000604515 566 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC5.09□□□□□ -1.59
HOXA1P49639 AL445493.3-201ENST00000619568 477 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 TMEM30CP-203ENST00000637814 1035 ntBASIC5.09□□□□□ -1.59
HOXA1P49639 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HOXA1P49639 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.09□□□□□ -1.59
HOXA1P49639 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
HOXA1P49639 AC096921.2-201ENST00000561507 1916 ntBASIC5.09□□□□□ -1.6
HOXA1P49639 AC083899.1-201ENST00000454465 3819 ntBASIC5.09□□□□□ -1.6
HOXA1P49639 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.09□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms