Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CDX1P47902 AC138907.8-201ENST00000623981 2256 ntBASIC5.06□□□□□ -1.6
CDX1P47902 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
CDX1P47902 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CDX1P47902 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CDX1P47902 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CDX1P47902 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC5.06□□□□□ -1.6
CDX1P47902 RPL5P20-201ENST00000403848 896 ntBASIC5.06□□□□□ -1.6
CDX1P47902 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.06□□□□□ -1.6
CDX1P47902 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CDX1P47902 RPS27AP6-201ENST00000427962 448 ntBASIC5.06□□□□□ -1.6
CDX1P47902 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
CDX1P47902 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CDX1P47902 GTF3AP6-201ENST00000432585 986 ntBASIC5.06□□□□□ -1.6
CDX1P47902 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CDX1P47902 ARL4AP4-201ENST00000434170 518 ntBASIC5.06□□□□□ -1.6
CDX1P47902 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
CDX1P47902 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC5.06□□□□□ -1.6
CDX1P47902 AL500527.1-201ENST00000448532 255 ntBASIC5.06□□□□□ -1.6
CDX1P47902 GAPDHP14-201ENST00000450472 937 ntBASIC5.06□□□□□ -1.6
CDX1P47902 AC069277.2-201ENST00000454211 432 ntBASIC5.06□□□□□ -1.6
CDX1P47902 RN7SL72P-201ENST00000460697 269 ntBASIC5.06□□□□□ -1.6
CDX1P47902 RN7SL741P-201ENST00000482473 289 ntBASIC5.06□□□□□ -1.6
CDX1P47902 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC5.06□□□□□ -1.6
CDX1P47902 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC5.06□□□□□ -1.6
CDX1P47902 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.06□□□□□ -1.6
CDX1P47902 AC016550.3-201ENST00000515706 767 ntBASIC5.06□□□□□ -1.6
CDX1P47902 RN7SKP183-201ENST00000517169 324 ntBASIC5.06□□□□□ -1.6
CDX1P47902 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC5.06□□□□□ -1.6
CDX1P47902 FTH1P11-201ENST00000517577 551 ntBASIC5.06□□□□□ -1.6
CDX1P47902 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CDX1P47902 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.06□□□□□ -1.6
CDX1P47902 TBCA-209ENST00000522370 435 ntTSL 3 BASIC5.06□□□□□ -1.6
CDX1P47902 OR10D4P-201ENST00000525892 951 ntBASIC5.06□□□□□ -1.6
CDX1P47902 AC135983.3-201ENST00000528049 1226 ntBASIC5.06□□□□□ -1.6
CDX1P47902 AP003168.1-201ENST00000530091 307 ntBASIC5.06□□□□□ -1.6
CDX1P47902 NPM1P42-201ENST00000560329 862 ntBASIC5.06□□□□□ -1.6
CDX1P47902 AC133552.4-201ENST00000576103 676 ntBASIC5.06□□□□□ -1.6
CDX1P47902 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC5.06□□□□□ -1.6
CDX1P47902 BUB1P1-201ENST00000603541 607 ntBASIC5.06□□□□□ -1.6
CDX1P47902 WBP1LP12-201ENST00000604449 331 ntBASIC5.06□□□□□ -1.6
CDX1P47902 SNORA74.4-201ENST00000607595 199 ntBASIC5.06□□□□□ -1.6
CDX1P47902 AC019131.2-201ENST00000609071 870 ntBASIC5.06□□□□□ -1.6
CDX1P47902 AL162574.2-201ENST00000614618 657 ntBASIC5.06□□□□□ -1.6
CDX1P47902 AP003499.2-201ENST00000624100 483 ntBASIC5.06□□□□□ -1.6
CDX1P47902 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC5.06□□□□□ -1.6
CDX1P47902 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC5.06□□□□□ -1.6
CDX1P47902 OR5AC4P-202ENST00000642086 985 ntBASIC5.06□□□□□ -1.6
CDX1P47902 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
CDX1P47902 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CDX1P47902 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC5.06□□□□□ -1.6
CDX1P47902 AC090181.3-201ENST00000624777 1514 ntBASIC5.06□□□□□ -1.6
CDX1P47902 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CDX1P47902 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CDX1P47902 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.06□□□□□ -1.6
CDX1P47902 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CDX1P47902 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
CDX1P47902 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.06□□□□□ -1.6
CDX1P47902 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
CDX1P47902 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
CDX1P47902 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
CDX1P47902 CASC19-228ENST00000641414 1684 ntBASIC5.05□□□□□ -1.6
CDX1P47902 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.05□□□□□ -1.6
CDX1P47902 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.05□□□□□ -1.6
CDX1P47902 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CDX1P47902 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
CDX1P47902 RNU6-729P-201ENST00000384399 107 ntBASIC5.05□□□□□ -1.6
CDX1P47902 RNU1-46P-201ENST00000384425 164 ntBASIC5.05□□□□□ -1.6
CDX1P47902 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CDX1P47902 BTF3P9-201ENST00000418784 283 ntBASIC5.05□□□□□ -1.6
CDX1P47902 RPL23AP85-201ENST00000421838 433 ntBASIC5.05□□□□□ -1.6
CDX1P47902 AC083862.1-201ENST00000427378 1242 ntBASIC5.05□□□□□ -1.6
CDX1P47902 MTND4LP14-201ENST00000429447 288 ntBASIC5.05□□□□□ -1.6
CDX1P47902 AL606490.7-201ENST00000433136 191 ntBASIC5.05□□□□□ -1.6
CDX1P47902 HMGB3P10-201ENST00000434734 572 ntBASIC5.05□□□□□ -1.6
CDX1P47902 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC5.05□□□□□ -1.6
CDX1P47902 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.05□□□□□ -1.6
CDX1P47902 AL627224.1-201ENST00000448334 444 ntBASIC5.05□□□□□ -1.6
CDX1P47902 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC5.05□□□□□ -1.6
CDX1P47902 RN7SL39P-201ENST00000462264 297 ntBASIC5.05□□□□□ -1.6
CDX1P47902 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC5.05□□□□□ -1.6
CDX1P47902 AC021087.2-201ENST00000504656 1203 ntBASIC5.05□□□□□ -1.6
CDX1P47902 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC5.05□□□□□ -1.6
CDX1P47902 AC018645.1-201ENST00000505003 109 ntBASIC5.05□□□□□ -1.6
CDX1P47902 COL6A4P2-205ENST00000509855 506 ntBASIC5.05□□□□□ -1.6
CDX1P47902 GUSBP9-201ENST00000510138 584 ntBASIC5.05□□□□□ -1.6
CDX1P47902 AC093816.1-201ENST00000515076 913 ntBASIC5.05□□□□□ -1.6
CDX1P47902 IGHV7-34-1-201ENST00000519200 350 ntBASIC5.05□□□□□ -1.6
CDX1P47902 CYCSP25-201ENST00000525280 316 ntBASIC5.05□□□□□ -1.6
CDX1P47902 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CDX1P47902 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC5.05□□□□□ -1.6
CDX1P47902 AC024405.1-201ENST00000532521 1042 ntBASIC5.05□□□□□ -1.6
CDX1P47902 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC5.05□□□□□ -1.6
CDX1P47902 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC5.05□□□□□ -1.6
CDX1P47902 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CDX1P47902 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
CDX1P47902 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC5.05□□□□□ -1.6
CDX1P47902 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC5.05□□□□□ -1.6
CDX1P47902 AL589863.1-201ENST00000595383 631 ntBASIC5.05□□□□□ -1.6
CDX1P47902 SNX6P1-201ENST00000601728 1224 ntBASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms