Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC018692.2-201ENST00000624130 348 ntBASIC6.18□□□□□ -1.42
MSX2P35548 AC114546.4-201ENST00000624413 369 ntBASIC6.18□□□□□ -1.42
MSX2P35548 AL353747.4-202ENST00000625787 674 ntTSL 3 BASIC6.18□□□□□ -1.42
MSX2P35548 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC6.18□□□□□ -1.42
MSX2P35548 AC026108.1-201ENST00000635444 547 ntBASIC6.18□□□□□ -1.42
MSX2P35548 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX2P35548 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC6.18□□□□□ -1.42
MSX2P35548 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.18□□□□□ -1.42
MSX2P35548 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX2P35548 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX2P35548 AC017002.4-201ENST00000604721 1525 ntBASIC6.18□□□□□ -1.42
MSX2P35548 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX2P35548 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSX2P35548 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSX2P35548 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSX2P35548 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX2P35548 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
MSX2P35548 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.18□□□□□ -1.42
MSX2P35548 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
MSX2P35548 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
MSX2P35548 NLN-202ENST00000502464 8354 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX2P35548 OFD1P17-201ENST00000437639 3018 ntBASIC6.17□□□□□ -1.42
MSX2P35548 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX2P35548 PAPPA-AS2-201ENST00000438048 1854 ntTSL 2 BASIC6.17□□□□□ -1.42
MSX2P35548 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX2P35548 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
MSX2P35548 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX2P35548 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
MSX2P35548 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX2P35548 CA1-225ENST00000626824 2405 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX2P35548 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX2P35548 S100Z-201ENST00000317593 1468 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
MSX2P35548 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
MSX2P35548 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
MSX2P35548 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC6.17□□□□□ -1.42
MSX2P35548 Y_RNA.201-201ENST00000364052 96 ntBASIC6.17□□□□□ -1.42
MSX2P35548 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC6.17□□□□□ -1.42
MSX2P35548 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX2P35548 NPM1P37-201ENST00000403105 874 ntBASIC6.17□□□□□ -1.42
MSX2P35548 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC6.17□□□□□ -1.42
MSX2P35548 AL449283.1-202ENST00000418249 604 ntBASIC6.17□□□□□ -1.42
MSX2P35548 HMGB1P49-201ENST00000418882 569 ntBASIC6.17□□□□□ -1.42
MSX2P35548 AC105393.2-201ENST00000431911 549 ntTSL 4 BASIC6.17□□□□□ -1.42
MSX2P35548 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC6.17□□□□□ -1.42
MSX2P35548 UBE2D3P1-201ENST00000436669 444 ntBASIC6.17□□□□□ -1.42
MSX2P35548 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX2P35548 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC6.17□□□□□ -1.42
MSX2P35548 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC6.17□□□□□ -1.42
MSX2P35548 PFN1P11-201ENST00000445829 389 ntBASIC6.17□□□□□ -1.42
MSX2P35548 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX2P35548 AC073387.1-201ENST00000453261 709 ntBASIC6.17□□□□□ -1.42
MSX2P35548 AC004692.1-201ENST00000455430 424 ntBASIC6.17□□□□□ -1.42
MSX2P35548 AL096803.1-201ENST00000456921 1021 ntBASIC6.17□□□□□ -1.42
MSX2P35548 AC016489.1-201ENST00000461109 375 ntBASIC6.17□□□□□ -1.42
MSX2P35548 RPSAP48-201ENST00000466509 889 ntBASIC6.17□□□□□ -1.42
MSX2P35548 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX2P35548 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX2P35548 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX2P35548 MTCYBP16-201ENST00000509187 1129 ntBASIC6.17□□□□□ -1.42
MSX2P35548 AC147055.3-201ENST00000510547 851 ntBASIC6.17□□□□□ -1.42
MSX2P35548 AK6-204ENST00000512561 587 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX2P35548 IGLC4-201ENST00000517690 248 ntBASIC6.17□□□□□ -1.42
MSX2P35548 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC6.17□□□□□ -1.42
MSX2P35548 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC6.17□□□□□ -1.42
MSX2P35548 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC6.17□□□□□ -1.42
MSX2P35548 AC004923.2-201ENST00000529649 369 ntBASIC6.17□□□□□ -1.42
MSX2P35548 SSU72P6-201ENST00000532644 488 ntBASIC6.17□□□□□ -1.42
MSX2P35548 OR4A40P-201ENST00000533878 948 ntBASIC6.17□□□□□ -1.42
MSX2P35548 AC008013.2-201ENST00000537555 348 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX2P35548 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC6.17□□□□□ -1.42
MSX2P35548 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
MSX2P35548 FRG2IP-201ENST00000563581 781 ntBASIC6.17□□□□□ -1.42
MSX2P35548 RN7SL270P-201ENST00000579643 281 ntBASIC6.17□□□□□ -1.42
MSX2P35548 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC6.17□□□□□ -1.42
MSX2P35548 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX2P35548 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX2P35548 ZNF397-211ENST00000592264 1104 ntTSL 3 BASIC6.17□□□□□ -1.42
MSX2P35548 AC010519.1-201ENST00000599924 344 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX2P35548 PRR13P3-201ENST00000603578 376 ntBASIC6.17□□□□□ -1.42
MSX2P35548 AL133507.1-201ENST00000605269 557 ntBASIC6.17□□□□□ -1.42
MSX2P35548 OR51C1P-201ENST00000608504 942 ntBASIC6.17□□□□□ -1.42
MSX2P35548 PART1_2.1-201ENST00000612397 250 ntBASIC6.17□□□□□ -1.42
MSX2P35548 AC026124.2-201ENST00000621847 656 ntBASIC6.17□□□□□ -1.42
MSX2P35548 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC6.17□□□□□ -1.42
MSX2P35548 AC090617.9-201ENST00000623751 147 ntBASIC6.17□□□□□ -1.42
MSX2P35548 AC008626.2-201ENST00000624425 248 ntBASIC6.17□□□□□ -1.42
MSX2P35548 AC243725.1-201ENST00000637164 436 ntBASIC6.17□□□□□ -1.42
MSX2P35548 5_8S_rRNA.6-201ENST00000637374 152 ntBASIC6.17□□□□□ -1.42
MSX2P35548 GOSR2-222ENST00000639031 885 ntTSL 3 BASIC6.17□□□□□ -1.42
MSX2P35548 ATM-229ENST00000639953 587 ntTSL 5 BASIC6.17□□□□□ -1.42
MSX2P35548 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX2P35548 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC6.17□□□□□ -1.42
MSX2P35548 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX2P35548 BX284613.1-201ENST00000452221 1641 ntBASIC6.17□□□□□ -1.42
MSX2P35548 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
MSX2P35548 AC093844.1-201ENST00000514910 1361 ntBASIC6.17□□□□□ -1.42
MSX2P35548 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX2P35548 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC6.17□□□□□ -1.42
MSX2P35548 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC6.17□□□□□ -1.42
MSX2P35548 AC093297.3-201ENST00000607056 2517 ntBASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms