Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC6.79□□□□□ -1.32
SCN4AP35499 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC6.79□□□□□ -1.32
SCN4AP35499 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.78□□□□□ -1.32
SCN4AP35499 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
SCN4AP35499 SSX3-202ENST00000376893 800 ntTSL 2 BASIC6.78□□□□□ -1.32
SCN4AP35499 RNU6ATAC21P-201ENST00000408656 126 ntBASIC6.78□□□□□ -1.32
SCN4AP35499 AC245028.1-201ENST00000423259 256 ntBASIC6.78□□□□□ -1.32
SCN4AP35499 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC6.78□□□□□ -1.32
SCN4AP35499 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC6.78□□□□□ -1.32
SCN4AP35499 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC6.78□□□□□ -1.32
SCN4AP35499 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC6.78□□□□□ -1.32
SCN4AP35499 RN7SL459P-201ENST00000481078 302 ntBASIC6.78□□□□□ -1.32
SCN4AP35499 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.78□□□□□ -1.32
SCN4AP35499 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC6.78□□□□□ -1.32
SCN4AP35499 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC6.78□□□□□ -1.32
SCN4AP35499 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC6.78□□□□□ -1.32
SCN4AP35499 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
SCN4AP35499 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
SCN4AP35499 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC6.78□□□□□ -1.32
SCN4AP35499 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.78□□□□□ -1.32
SCN4AP35499 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
SCN4AP35499 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC6.78□□□□□ -1.32
SCN4AP35499 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC6.78□□□□□ -1.32
SCN4AP35499 AC104837.2-201ENST00000427236 424 ntBASIC6.78□□□□□ -1.32
SCN4AP35499 FAM96AP1-201ENST00000430879 482 ntBASIC6.78□□□□□ -1.32
SCN4AP35499 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 AL022237.1-201ENST00000446663 358 ntBASIC6.78□□□□□ -1.32
SCN4AP35499 RPL38P3-201ENST00000484463 213 ntBASIC6.78□□□□□ -1.32
SCN4AP35499 CCDC11P1-201ENST00000503137 1162 ntBASIC6.78□□□□□ -1.32
SCN4AP35499 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.78□□□□□ -1.32
SCN4AP35499 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.78□□□□□ -1.32
SCN4AP35499 PRELID3BP5-201ENST00000508612 460 ntBASIC6.78□□□□□ -1.32
SCN4AP35499 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC6.78□□□□□ -1.32
SCN4AP35499 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC6.78□□□□□ -1.32
SCN4AP35499 BLZF2P-201ENST00000553776 1130 ntBASIC6.78□□□□□ -1.32
SCN4AP35499 AC234771.5-201ENST00000600161 514 ntBASIC6.78□□□□□ -1.32
SCN4AP35499 AL133406.3-201ENST00000606817 541 ntBASIC6.78□□□□□ -1.32
SCN4AP35499 AP001885.1-201ENST00000621658 558 ntBASIC6.78□□□□□ -1.32
SCN4AP35499 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC6.78□□□□□ -1.32
SCN4AP35499 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
SCN4AP35499 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.32
SCN4AP35499 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC6.77□□□□□ -1.32
SCN4AP35499 HSPA8P14-201ENST00000552265 1805 ntBASIC6.77□□□□□ -1.32
SCN4AP35499 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.77□□□□□ -1.33
SCN4AP35499 AC110597.1-201ENST00000562669 3176 ntBASIC6.77□□□□□ -1.33
SCN4AP35499 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
SCN4AP35499 FAM32BP-201ENST00000344033 333 ntBASIC6.77□□□□□ -1.33
SCN4AP35499 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC6.77□□□□□ -1.33
SCN4AP35499 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
SCN4AP35499 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC6.77□□□□□ -1.33
SCN4AP35499 RNU6ATAC7P-201ENST00000408111 127 ntBASIC6.77□□□□□ -1.33
SCN4AP35499 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.77□□□□□ -1.33
SCN4AP35499 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC6.77□□□□□ -1.33
SCN4AP35499 NIFKP3-201ENST00000417799 865 ntBASIC6.77□□□□□ -1.33
SCN4AP35499 TPT1P13-201ENST00000449760 499 ntBASIC6.77□□□□□ -1.33
SCN4AP35499 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC6.77□□□□□ -1.33
SCN4AP35499 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.77□□□□□ -1.33
SCN4AP35499 AC090527.3-201ENST00000619041 548 ntBASIC6.77□□□□□ -1.33
SCN4AP35499 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC6.77□□□□□ -1.33
SCN4AP35499 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
SCN4AP35499 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
SCN4AP35499 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC6.77□□□□□ -1.33
SCN4AP35499 THAP12P9-201ENST00000503971 2360 ntBASIC6.77□□□□□ -1.33
SCN4AP35499 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
SCN4AP35499 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
SCN4AP35499 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
SCN4AP35499 ZNF101P1-201ENST00000435701 1720 ntBASIC6.76□□□□□ -1.33
SCN4AP35499 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC6.76□□□□□ -1.33
SCN4AP35499 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.76□□□□□ -1.33
SCN4AP35499 LDHAP2-201ENST00000437325 985 ntBASIC6.76□□□□□ -1.33
SCN4AP35499 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC6.76□□□□□ -1.33
SCN4AP35499 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC6.76□□□□□ -1.33
SCN4AP35499 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC6.76□□□□□ -1.33
SCN4AP35499 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC6.76□□□□□ -1.33
SCN4AP35499 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
SCN4AP35499 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC6.76□□□□□ -1.33
SCN4AP35499 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC6.76□□□□□ -1.33
SCN4AP35499 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC6.76□□□□□ -1.33
SCN4AP35499 CYP4F35P-202ENST00000636121 390 ntBASIC6.76□□□□□ -1.33
SCN4AP35499 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
SCN4AP35499 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC6.76□□□□□ -1.33
SCN4AP35499 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
SCN4AP35499 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.76□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms