Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TRBV5-2-201ENST00000489095 273 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A1P20908 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.51□□□□□ -1.53
COL5A1P20908 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.51□□□□□ -1.53
COL5A1P20908 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC5.51□□□□□ -1.53
COL5A1P20908 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC5.51□□□□□ -1.53
COL5A1P20908 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A1P20908 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A1P20908 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A1P20908 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A1P20908 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A1P20908 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A1P20908 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A1P20908 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A1P20908 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
COL5A1P20908 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.51□□□□□ -1.53
COL5A1P20908 AC005042.1-201ENST00000393397 800 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 AC009804.1-201ENST00000400949 179 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 FAR2P2-201ENST00000413041 594 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 AC007562.1-201ENST00000421819 517 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 FAR2P4-202ENST00000425399 584 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.51□□□□□ -1.53
COL5A1P20908 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.51□□□□□ -1.53
COL5A1P20908 AC023274.2-201ENST00000445264 521 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 FAR2P1-206ENST00000449736 709 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 RPL7P61-201ENST00000451721 751 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.51□□□□□ -1.53
COL5A1P20908 BX284632.1-201ENST00000478218 541 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 EIF1P7-201ENST00000487533 337 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL5A1P20908 AC074255.1-201ENST00000511259 501 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC5.51□□□□□ -1.53
COL5A1P20908 AC022832.1-201ENST00000530718 645 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 AL049779.2-201ENST00000553847 315 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.51□□□□□ -1.53
COL5A1P20908 AC100827.5-201ENST00000615883 426 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 AP002505.2-201ENST00000623585 696 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 AC132068.1-201ENST00000623805 459 ntBASIC5.51□□□□□ -1.53
COL5A1P20908 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
COL5A1P20908 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.5□□□□□ -1.53
COL5A1P20908 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC5.5□□□□□ -1.53
COL5A1P20908 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.5□□□□□ -1.53
COL5A1P20908 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
COL5A1P20908 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
COL5A1P20908 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.5□□□□□ -1.53
COL5A1P20908 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 ZNF658B-201ENST00000602828 3408 ntBASIC5.5□□□□□ -1.53
COL5A1P20908 SLC30A8-205ENST00000519688 5242 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC5.5□□□□□ -1.53
COL5A1P20908 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
COL5A1P20908 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
COL5A1P20908 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.5□□□□□ -1.53
COL5A1P20908 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.5□□□□□ -1.53
COL5A1P20908 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.5□□□□□ -1.53
COL5A1P20908 AC004453.1-201ENST00000487895 408 ntBASIC5.5□□□□□ -1.53
COL5A1P20908 AC105384.2-201ENST00000508433 640 ntBASIC5.5□□□□□ -1.53
COL5A1P20908 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5.5□□□□□ -1.53
COL5A1P20908 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.5□□□□□ -1.53
COL5A1P20908 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
COL5A1P20908 AC126177.5-201ENST00000549599 178 ntBASIC5.5□□□□□ -1.53
COL5A1P20908 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.5□□□□□ -1.53
COL5A1P20908 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.5□□□□□ -1.53
COL5A1P20908 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.5□□□□□ -1.53
COL5A1P20908 uc_338.18-201ENST00000615451 175 ntBASIC5.5□□□□□ -1.53
COL5A1P20908 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.5□□□□□ -1.53
COL5A1P20908 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.5□□□□□ -1.53
COL5A1P20908 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
COL5A1P20908 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
COL5A1P20908 AP003175.1-201ENST00000641383 6658 ntBASIC5.5□□□□□ -1.53
COL5A1P20908 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A1P20908 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC5.49□□□□□ -1.53
COL5A1P20908 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A1P20908 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A1P20908 AC140479.2-201ENST00000421567 3130 ntBASIC5.49□□□□□ -1.53
COL5A1P20908 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A1P20908 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A1P20908 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A1P20908 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
COL5A1P20908 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A1P20908 AL161912.4-201ENST00000623889 2468 ntBASIC5.49□□□□□ -1.53
COL5A1P20908 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.49□□□□□ -1.53
COL5A1P20908 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL5A1P20908 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
COL5A1P20908 SNORA70.9-201ENST00000384370 135 ntBASIC5.49□□□□□ -1.53
COL5A1P20908 AL139128.1-201ENST00000413921 941 ntBASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms