Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PIGR-201ENST00000356495 4279 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
COL9A1P20849 DTL-206ENST00000542077 4471 ntTSL 2 BASIC8.42□□□□□ -1.06
COL9A1P20849 IL2RA-202ENST00000379954 1562 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
COL9A1P20849 MIER1-201ENST00000355356 4818 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
COL9A1P20849 RBM18-201ENST00000417201 4974 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
COL9A1P20849 AC092447.10-201ENST00000620607 1652 ntBASIC8.42□□□□□ -1.06
COL9A1P20849 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.06
COL9A1P20849 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC8.42□□□□□ -1.06
COL9A1P20849 ZNF540-202ENST00000343599 3073 ntAPPRIS P3 TSL 5 BASIC8.42□□□□□ -1.06
COL9A1P20849 DPH3-202ENST00000383775 3052 ntTSL 2 BASIC8.42□□□□□ -1.06
COL9A1P20849 NHLRC3-202ENST00000379600 3549 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
COL9A1P20849 CALCOCO2-201ENST00000258947 3682 ntAPPRIS P3 TSL 1 (best) BASIC8.42□□□□□ -1.06
COL9A1P20849 SLITRK1-201ENST00000377084 5189 ntAPPRIS P1 BASIC8.42□□□□□ -1.06
COL9A1P20849 PIEZO2-201ENST00000302079 9356 ntTSL 5 BASIC8.42□□□□□ -1.06
COL9A1P20849 DENND2C-201ENST00000393274 6163 ntTSL 5 BASIC8.41□□□□□ -1.06
COL9A1P20849 MAK-201ENST00000313243 3984 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
COL9A1P20849 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC8.41□□□□□ -1.06
COL9A1P20849 SLC10A7-201ENST00000335472 2798 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
COL9A1P20849 GPNMB-202ENST00000381990 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
COL9A1P20849 USP2-AS1-201ENST00000498979 2486 ntTSL 3 BASIC8.41□□□□□ -1.06
COL9A1P20849 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC8.41□□□□□ -1.06
COL9A1P20849 ARMCX5-GPRASP2-206ENST00000476910 1848 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
COL9A1P20849 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
COL9A1P20849 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
COL9A1P20849 TRHR-202ENST00000518632 1660 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
COL9A1P20849 AL451064.2-201ENST00000623514 1654 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC8.41□□□□□ -1.06
COL9A1P20849 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC8.41□□□□□ -1.06
COL9A1P20849 ELL2P4-201ENST00000446870 1376 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 UIMC1-211ENST00000510698 1334 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
COL9A1P20849 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC8.41□□□□□ -1.06
COL9A1P20849 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
COL9A1P20849 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
COL9A1P20849 RN7SKP44-201ENST00000363602 316 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 PARD3-204ENST00000374768 799 ntTSL 3 BASIC8.41□□□□□ -1.06
COL9A1P20849 SNORD115.1-201ENST00000391109 76 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 SNORA57.2-201ENST00000391265 128 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 RPS4XP8-201ENST00000402039 771 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 SOD1P1-201ENST00000407803 440 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 RN7SKP106-201ENST00000410832 272 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC8.41□□□□□ -1.06
COL9A1P20849 LINC00426-202ENST00000417079 1045 ntTSL 3 BASIC8.41□□□□□ -1.06
COL9A1P20849 PMCHL1-202ENST00000423102 261 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 MTCYBP10-201ENST00000424905 650 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC8.41□□□□□ -1.06
COL9A1P20849 FTH1P16-201ENST00000435241 552 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 CACYBPP1-201ENST00000438592 684 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 RPL15P1-201ENST00000439981 600 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 AC003035.2-201ENST00000448948 696 ntTSL 3 BASIC8.41□□□□□ -1.06
COL9A1P20849 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC8.41□□□□□ -1.06
COL9A1P20849 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC8.41□□□□□ -1.06
COL9A1P20849 AC103563.5-201ENST00000455643 364 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 RNU6-329P-201ENST00000459618 107 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 OR7E163P-201ENST00000505943 894 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 HMGB3P15-201ENST00000507326 574 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 HMGB1P28-201ENST00000507778 552 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 RNU6-559P-201ENST00000516151 98 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 C14orf159-213ENST00000519019 834 ntTSL 3 BASIC8.41□□□□□ -1.06
COL9A1P20849 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC8.41□□□□□ -1.06
COL9A1P20849 AC090568.2-203ENST00000521433 579 ntTSL 4 BASIC8.41□□□□□ -1.06
COL9A1P20849 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC8.41□□□□□ -1.06
COL9A1P20849 SLC2A13P1-201ENST00000531560 322 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC8.41□□□□□ -1.06
COL9A1P20849 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC8.41□□□□□ -1.06
COL9A1P20849 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC8.41□□□□□ -1.06
COL9A1P20849 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC8.41□□□□□ -1.06
COL9A1P20849 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC8.41□□□□□ -1.06
COL9A1P20849 AC104046.1-201ENST00000559487 406 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 AC093826.2-201ENST00000579042 108 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC8.41□□□□□ -1.06
COL9A1P20849 Metazoa_SRP.27-201ENST00000617573 258 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 DLEU1_2.1-201ENST00000617920 342 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 TEX41-293ENST00000630451 690 ntTSL 5 BASIC8.41□□□□□ -1.06
COL9A1P20849 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 AC132825.4-201ENST00000582527 3644 ntBASIC8.41□□□□□ -1.06
COL9A1P20849 PALM2-AKAP2-202ENST00000374530 7507 ntTSL 2 BASIC8.41□□□□□ -1.06
COL9A1P20849 ULBP1-201ENST00000229708 3142 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
COL9A1P20849 VLDLR-203ENST00000382100 9163 ntAPPRIS P3 TSL 1 (best) BASIC8.41□□□□□ -1.06
COL9A1P20849 SULT1C2-202ENST00000326853 2828 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
COL9A1P20849 AC092683.1-204ENST00000610408 2830 ntTSL 2 BASIC8.41□□□□□ -1.06
COL9A1P20849 AC159540.2-202ENST00000613749 2830 ntTSL 2 BASIC8.41□□□□□ -1.06
COL9A1P20849 ZNF233-201ENST00000391958 2784 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
COL9A1P20849 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC8.41□□□□□ -1.06
COL9A1P20849 NOS1-203ENST00000344089 4340 ntTSL 5 BASIC8.41□□□□□ -1.06
COL9A1P20849 SLFN12-206ENST00000452764 2423 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
COL9A1P20849 MICB-204ENST00000538442 2411 ntAPPRIS ALT2 TSL 2 BASIC8.41□□□□□ -1.06
COL9A1P20849 GPD2-203ENST00000409674 2397 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
COL9A1P20849 SH3KBP1-203ENST00000379716 3819 ntTSL 2 BASIC8.41□□□□□ -1.06
COL9A1P20849 CNR2-201ENST00000374472 5254 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
COL9A1P20849 ZNF791-202ENST00000446165 6412 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
COL9A1P20849 NPR3-202ENST00000326958 6380 ntTSL 2 BASIC8.41□□□□□ -1.06
COL9A1P20849 GBP5-201ENST00000370459 2011 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
COL9A1P20849 AL591848.3-201ENST00000570141 2968 ntBASIC8.4□□□□□ -1.06
COL9A1P20849 RBBP4-206ENST00000458695 1674 ntTSL 2 BASIC8.4□□□□□ -1.06
COL9A1P20849 CA8-201ENST00000317995 3812 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
COL9A1P20849 LAMB4-203ENST00000418464 2600 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
COL9A1P20849 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
COL9A1P20849 SYNE1-217ENST00000466159 2610 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
COL9A1P20849 ZNF30-201ENST00000303586 2579 ntAPPRIS P4 TSL 1 (best) BASIC8.4□□□□□ -1.06
COL9A1P20849 CEP152-202ENST00000380950 5635 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms