Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
LIM2P55344 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LIM2P55344 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LIM2P55344 LYPLA1P3-201ENST00000402650 695 ntBASIC5.49□□□□□ -1.53
LIM2P55344 HMGN1P20-201ENST00000411849 300 ntBASIC5.49□□□□□ -1.53
LIM2P55344 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
LIM2P55344 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.49□□□□□ -1.53
LIM2P55344 AL512637.1-201ENST00000439523 1231 ntBASIC5.49□□□□□ -1.53
LIM2P55344 FRG2FP-204ENST00000453982 852 ntBASIC5.49□□□□□ -1.53
LIM2P55344 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LIM2P55344 RN7SL284P-201ENST00000498823 275 ntBASIC5.49□□□□□ -1.53
LIM2P55344 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.49□□□□□ -1.53
LIM2P55344 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.49□□□□□ -1.53
LIM2P55344 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
LIM2P55344 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.49□□□□□ -1.53
LIM2P55344 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LIM2P55344 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.49□□□□□ -1.53
LIM2P55344 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.49□□□□□ -1.53
LIM2P55344 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC5.49□□□□□ -1.53
LIM2P55344 AC126615.2-201ENST00000553003 515 ntBASIC5.49□□□□□ -1.53
LIM2P55344 ZNF322P1-201ENST00000568013 1209 ntBASIC5.49□□□□□ -1.53
LIM2P55344 AL163952.1-202ENST00000569625 600 ntBASIC5.49□□□□□ -1.53
LIM2P55344 AC005899.5-201ENST00000584721 552 ntTSL 5 BASIC5.49□□□□□ -1.53
LIM2P55344 AC060780.2-201ENST00000589047 198 ntBASIC5.49□□□□□ -1.53
LIM2P55344 RPL12P48-201ENST00000605620 304 ntBASIC5.49□□□□□ -1.53
LIM2P55344 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LIM2P55344 MIR6778-201ENST00000617912 73 ntBASIC5.49□□□□□ -1.53
LIM2P55344 AL512356.3-201ENST00000623005 461 ntBASIC5.49□□□□□ -1.53
LIM2P55344 OR8G3P-202ENST00000641572 1255 ntBASIC5.49□□□□□ -1.53
LIM2P55344 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.49□□□□□ -1.53
LIM2P55344 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LIM2P55344 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
LIM2P55344 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LIM2P55344 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIM2P55344 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIM2P55344 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LIM2P55344 AL137141.1-201ENST00000624622 4836 ntBASIC5.48□□□□□ -1.53
LIM2P55344 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIM2P55344 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LIM2P55344 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.48□□□□□ -1.53
LIM2P55344 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.48□□□□□ -1.53
LIM2P55344 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIM2P55344 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.48□□□□□ -1.53
LIM2P55344 AC123912.3-201ENST00000600907 1367 ntBASIC5.48□□□□□ -1.53
LIM2P55344 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.48□□□□□ -1.53
LIM2P55344 AC019205.1-201ENST00000421830 730 ntBASIC5.48□□□□□ -1.53
LIM2P55344 CRIP1P1-201ENST00000427567 185 ntBASIC5.48□□□□□ -1.53
LIM2P55344 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.48□□□□□ -1.53
LIM2P55344 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.48□□□□□ -1.53
LIM2P55344 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LIM2P55344 RPL12P39-201ENST00000455456 496 ntBASIC5.48□□□□□ -1.53
LIM2P55344 AC094085.1-201ENST00000468914 584 ntBASIC5.48□□□□□ -1.53
LIM2P55344 AC128716.1-201ENST00000475129 166 ntBASIC5.48□□□□□ -1.53
LIM2P55344 AC105384.2-201ENST00000508433 640 ntBASIC5.48□□□□□ -1.53
LIM2P55344 B4GALNT2P1-201ENST00000508857 307 ntBASIC5.48□□□□□ -1.53
LIM2P55344 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.48□□□□□ -1.53
LIM2P55344 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
LIM2P55344 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.48□□□□□ -1.53
LIM2P55344 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.48□□□□□ -1.53
LIM2P55344 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.48□□□□□ -1.53
LIM2P55344 NDUFA5P11-201ENST00000567995 343 ntBASIC5.48□□□□□ -1.53
LIM2P55344 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.48□□□□□ -1.53
LIM2P55344 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.48□□□□□ -1.53
LIM2P55344 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.48□□□□□ -1.53
LIM2P55344 MIR4260-201ENST00000583107 67 ntBASIC5.48□□□□□ -1.53
LIM2P55344 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIM2P55344 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIM2P55344 AC022400.9-201ENST00000623633 273 ntBASIC5.48□□□□□ -1.53
LIM2P55344 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.48□□□□□ -1.53
LIM2P55344 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIM2P55344 AC004076.2-201ENST00000620532 3323 ntBASIC5.48□□□□□ -1.53
LIM2P55344 ZNF402P-201ENST00000404435 3100 ntBASIC5.48□□□□□ -1.53
LIM2P55344 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.48□□□□□ -1.53
LIM2P55344 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LIM2P55344 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIM2P55344 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LIM2P55344 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LIM2P55344 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LIM2P55344 AC011933.2-201ENST00000578539 2790 ntBASIC5.48□□□□□ -1.53
LIM2P55344 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.48□□□□□ -1.53
LIM2P55344 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIM2P55344 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
LIM2P55344 AC117409.1-201ENST00000470499 1310 ntBASIC5.48□□□□□ -1.53
LIM2P55344 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIM2P55344 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIM2P55344 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
LIM2P55344 OR4G1P-202ENST00000641173 1788 ntBASIC5.47□□□□□ -1.53
LIM2P55344 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIM2P55344 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.47□□□□□ -1.53
LIM2P55344 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.47□□□□□ -1.53
LIM2P55344 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
LIM2P55344 DNM1P47-203ENST00000571780 12667 ntBASIC5.47□□□□□ -1.53
LIM2P55344 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIM2P55344 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
LIM2P55344 AC023490.2-201ENST00000359859 470 ntBASIC5.47□□□□□ -1.53
LIM2P55344 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC5.47□□□□□ -1.53
LIM2P55344 RNU11-201ENST00000387069 134 ntBASIC5.47□□□□□ -1.53
LIM2P55344 OR7E101P-201ENST00000400428 513 ntBASIC5.47□□□□□ -1.53
LIM2P55344 SNORA11.5-201ENST00000408163 128 ntBASIC5.47□□□□□ -1.53
LIM2P55344 AL357752.1-201ENST00000412817 349 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms