Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC8.06□□□□□ -1.12
MSH6P52701 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC8.05□□□□□ -1.12
MSH6P52701 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC8.05□□□□□ -1.12
MSH6P52701 ZNF733P-202ENST00000444809 1573 ntBASIC8.05□□□□□ -1.12
MSH6P52701 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC8.05□□□□□ -1.12
MSH6P52701 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
MSH6P52701 ZNF840P-201ENST00000504759 1996 ntBASIC8.05□□□□□ -1.12
MSH6P52701 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
MSH6P52701 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC8.05□□□□□ -1.12
MSH6P52701 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
MSH6P52701 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC8.05□□□□□ -1.12
MSH6P52701 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC8.05□□□□□ -1.12
MSH6P52701 AL390774.1-201ENST00000411924 246 ntBASIC8.05□□□□□ -1.12
MSH6P52701 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC8.05□□□□□ -1.12
MSH6P52701 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC8.05□□□□□ -1.12
MSH6P52701 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC8.05□□□□□ -1.12
MSH6P52701 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC8.05□□□□□ -1.12
MSH6P52701 KCTD9P4-201ENST00000526766 1166 ntBASIC8.05□□□□□ -1.12
MSH6P52701 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC8.05□□□□□ -1.12
MSH6P52701 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC8.05□□□□□ -1.12
MSH6P52701 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC8.05□□□□□ -1.12
MSH6P52701 AP002799.1-201ENST00000623552 423 ntBASIC8.05□□□□□ -1.12
MSH6P52701 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC8.05□□□□□ -1.12
MSH6P52701 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
MSH6P52701 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC8.05□□□□□ -1.12
MSH6P52701 AC137056.2-201ENST00000624055 1958 ntBASIC8.05□□□□□ -1.12
MSH6P52701 AC006213.6-201ENST00000623722 4179 ntBASIC8.05□□□□□ -1.12
MSH6P52701 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC8.04□□□□□ -1.12
MSH6P52701 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSH6P52701 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC8.04□□□□□ -1.12
MSH6P52701 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
MSH6P52701 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC8.04□□□□□ -1.12
MSH6P52701 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC8.04□□□□□ -1.12
MSH6P52701 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSH6P52701 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC8.04□□□□□ -1.12
MSH6P52701 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC8.04□□□□□ -1.12
MSH6P52701 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC8.04□□□□□ -1.12
MSH6P52701 DNAJB5P1-201ENST00000454004 806 ntBASIC8.04□□□□□ -1.12
MSH6P52701 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC8.04□□□□□ -1.12
MSH6P52701 BX284632.1-201ENST00000478218 541 ntBASIC8.04□□□□□ -1.12
MSH6P52701 MGST2-204ENST00000506797 634 ntTSL 2 BASIC8.04□□□□□ -1.12
MSH6P52701 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC8.04□□□□□ -1.12
MSH6P52701 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC8.04□□□□□ -1.12
MSH6P52701 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC8.04□□□□□ -1.12
MSH6P52701 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC8.04□□□□□ -1.12
MSH6P52701 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC8.04□□□□□ -1.12
MSH6P52701 MIR4480-201ENST00000582492 71 ntBASIC8.04□□□□□ -1.12
MSH6P52701 FAM25E-202ENST00000608562 189 ntBASIC8.04□□□□□ -1.12
MSH6P52701 AC022726.2-201ENST00000634673 547 ntBASIC8.04□□□□□ -1.12
MSH6P52701 FBXL21-201ENST00000297158 1305 ntBASIC8.04□□□□□ -1.12
MSH6P52701 HSPA8P18-201ENST00000439846 1928 ntBASIC8.04□□□□□ -1.12
MSH6P52701 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC8.04□□□□□ -1.12
MSH6P52701 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC8.04□□□□□ -1.12
MSH6P52701 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC8.04□□□□□ -1.12
MSH6P52701 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSH6P52701 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
MSH6P52701 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC8.04□□□□□ -1.12
MSH6P52701 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC8.03□□□□□ -1.12
MSH6P52701 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC8.03□□□□□ -1.12
MSH6P52701 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSH6P52701 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSH6P52701 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
MSH6P52701 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC8.03□□□□□ -1.12
MSH6P52701 OR5W1P-201ENST00000423705 938 ntBASIC8.03□□□□□ -1.12
MSH6P52701 AC108075.1-201ENST00000424692 529 ntBASIC8.03□□□□□ -1.12
MSH6P52701 CEACAMP9-201ENST00000442990 513 ntBASIC8.03□□□□□ -1.12
MSH6P52701 AC109462.1-201ENST00000491087 368 ntBASIC8.03□□□□□ -1.12
MSH6P52701 RPEP1-201ENST00000504507 658 ntBASIC8.03□□□□□ -1.12
MSH6P52701 AC110775.1-201ENST00000513721 462 ntBASIC8.03□□□□□ -1.12
MSH6P52701 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC8.03□□□□□ -1.12
MSH6P52701 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC8.03□□□□□ -1.12
MSH6P52701 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC8.03□□□□□ -1.12
MSH6P52701 AP004607.2-201ENST00000533949 322 ntBASIC8.03□□□□□ -1.12
MSH6P52701 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC8.03□□□□□ -1.12
MSH6P52701 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC8.03□□□□□ -1.12
MSH6P52701 AC091953.3-201ENST00000623220 236 ntBASIC8.03□□□□□ -1.12
MSH6P52701 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC8.03□□□□□ -1.12
MSH6P52701 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC8.03□□□□□ -1.12
MSH6P52701 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
MSH6P52701 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
MSH6P52701 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
MSH6P52701 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSH6P52701 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC8.03□□□□□ -1.12
MSH6P52701 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSH6P52701 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
MSH6P52701 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC8.03□□□□□ -1.12
MSH6P52701 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC8.02□□□□□ -1.12
MSH6P52701 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC8.02□□□□□ -1.12
MSH6P52701 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC8.02□□□□□ -1.12
MSH6P52701 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC8.02□□□□□ -1.12
MSH6P52701 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC8.02□□□□□ -1.12
MSH6P52701 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
MSH6P52701 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSH6P52701 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC8.02□□□□□ -1.13
MSH6P52701 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC8.02□□□□□ -1.13
MSH6P52701 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC8.02□□□□□ -1.13
MSH6P52701 AC096921.2-201ENST00000561507 1916 ntBASIC8.02□□□□□ -1.13
MSH6P52701 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
MSH6P52701 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC8.02□□□□□ -1.13
MSH6P52701 PTCD2P2-201ENST00000415579 1095 ntBASIC8.02□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms