Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MT1L-202ENST00000566367 78 ntBASIC7.27□□□□□ -1.25
MSX1P28360 AC137800.2-201ENST00000574375 120 ntBASIC7.27□□□□□ -1.25
MSX1P28360 AC137056.1-202ENST00000575772 753 ntTSL 2 BASIC7.27□□□□□ -1.25
MSX1P28360 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC7.27□□□□□ -1.25
MSX1P28360 AC114488.2-207ENST00000585660 700 ntTSL 5 BASIC7.27□□□□□ -1.25
MSX1P28360 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC7.27□□□□□ -1.25
MSX1P28360 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC7.27□□□□□ -1.25
MSX1P28360 AC005387.1-201ENST00000597837 352 ntTSL 3 BASIC7.27□□□□□ -1.25
MSX1P28360 AC011453.2-201ENST00000603737 729 ntBASIC7.27□□□□□ -1.25
MSX1P28360 AC018558.4-201ENST00000622153 281 ntBASIC7.27□□□□□ -1.25
MSX1P28360 AC079228.1-201ENST00000624774 1049 ntBASIC7.27□□□□□ -1.25
MSX1P28360 LINC01206-228ENST00000628718 871 ntTSL 5 BASIC7.27□□□□□ -1.25
MSX1P28360 LINC01359-205ENST00000634604 1050 ntTSL 5 BASIC7.27□□□□□ -1.25
MSX1P28360 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC7.27□□□□□ -1.25
MSX1P28360 OR10R2-203ENST00000641400 975 ntAPPRIS ALT2 BASIC7.27□□□□□ -1.25
MSX1P28360 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
MSX1P28360 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
MSX1P28360 PTP4A2-218ENST00000602725 3353 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
MSX1P28360 ZNF2-204ENST00000617923 3885 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
MSX1P28360 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
MSX1P28360 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC7.27□□□□□ -1.25
MSX1P28360 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC7.27□□□□□ -1.25
MSX1P28360 AL137918.1-201ENST00000624542 1922 ntBASIC7.27□□□□□ -1.25
MSX1P28360 SLC17A3-203ENST00000361703 1543 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
MSX1P28360 CASC19-243ENST00000641588 1546 ntBASIC7.27□□□□□ -1.25
MSX1P28360 FAM114A1-201ENST00000358869 4050 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
MSX1P28360 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC7.27□□□□□ -1.25
MSX1P28360 AL157831.2-201ENST00000564681 3095 ntBASIC7.26□□□□□ -1.25
MSX1P28360 EPS8-213ENST00000543612 2965 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
MSX1P28360 AC004947.1-201ENST00000420912 2781 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
MSX1P28360 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
MSX1P28360 ABCA4-207ENST00000536513 3740 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
MSX1P28360 GLS2-215ENST00000539272 2174 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
MSX1P28360 FAM122C-211ENST00000623326 2064 ntAPPRIS ALT2 TSL 1 (best) BASIC7.26□□□□□ -1.25
MSX1P28360 AKAP3-206ENST00000545990 3318 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
MSX1P28360 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
MSX1P28360 ZNF430-203ENST00000595401 3021 ntTSL 2 BASIC7.26□□□□□ -1.25
MSX1P28360 ADGRE1-201ENST00000250572 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC7.26□□□□□ -1.25
MSX1P28360 NSRP1P1-201ENST00000444067 1693 ntBASIC7.26□□□□□ -1.25
MSX1P28360 GPBP1L1-201ENST00000290795 3599 ntAPPRIS P1 TSL 5 BASIC7.26□□□□□ -1.25
MSX1P28360 SEMA3C-203ENST00000419255 2415 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
MSX1P28360 CD46-205ENST00000358170 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC7.26□□□□□ -1.25
MSX1P28360 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC7.26□□□□□ -1.25
MSX1P28360 KIAA0753-201ENST00000361413 4859 ntAPPRIS P2 TSL 1 (best) BASIC7.26□□□□□ -1.25
MSX1P28360 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC7.26□□□□□ -1.25
MSX1P28360 RNA5SP149-201ENST00000364952 92 ntBASIC7.26□□□□□ -1.25
MSX1P28360 RN7SKP1-201ENST00000365525 307 ntBASIC7.26□□□□□ -1.25
MSX1P28360 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC7.26□□□□□ -1.25
MSX1P28360 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC7.26□□□□□ -1.25
MSX1P28360 AC073842.1-201ENST00000376482 342 ntTSL 5 BASIC7.26□□□□□ -1.25
MSX1P28360 SNORA7B-201ENST00000384360 139 ntBASIC7.26□□□□□ -1.25
MSX1P28360 AL590730.1-202ENST00000418875 321 ntTSL 2 BASIC7.26□□□□□ -1.25
MSX1P28360 MTCO2P12-201ENST00000427426 682 ntBASIC7.26□□□□□ -1.25
MSX1P28360 PHBP4-201ENST00000437447 837 ntBASIC7.26□□□□□ -1.25
MSX1P28360 AL831737.1-201ENST00000441288 271 ntBASIC7.26□□□□□ -1.25
MSX1P28360 AL136454.1-201ENST00000443181 466 ntBASIC7.26□□□□□ -1.25
MSX1P28360 GGT3P-203ENST00000445651 368 ntTSL 2 BASIC7.26□□□□□ -1.25
MSX1P28360 AL590369.1-201ENST00000455074 470 ntTSL 2 BASIC7.26□□□□□ -1.25
MSX1P28360 RANP1-206ENST00000455094 651 ntBASIC7.26□□□□□ -1.25
MSX1P28360 AL357143.1-201ENST00000457239 934 ntTSL 5 BASIC7.26□□□□□ -1.25
MSX1P28360 AC022364.2-201ENST00000457963 554 ntBASIC7.26□□□□□ -1.25
MSX1P28360 ABRACL-202ENST00000461027 456 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
MSX1P28360 AL035660.2-201ENST00000461248 556 ntTSL 2 BASIC7.26□□□□□ -1.25
MSX1P28360 RN7SL740P-201ENST00000467060 344 ntBASIC7.26□□□□□ -1.25
MSX1P28360 RN7SL815P-201ENST00000470970 290 ntBASIC7.26□□□□□ -1.25
MSX1P28360 RPS3AP14-201ENST00000483907 780 ntBASIC7.26□□□□□ -1.25
MSX1P28360 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC7.26□□□□□ -1.25
MSX1P28360 RN7SL416P-201ENST00000494042 298 ntBASIC7.26□□□□□ -1.25
MSX1P28360 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC7.26□□□□□ -1.25
MSX1P28360 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
MSX1P28360 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC7.26□□□□□ -1.25
MSX1P28360 RN7SKP31-201ENST00000516354 278 ntBASIC7.26□□□□□ -1.25
MSX1P28360 IGHV7-40-201ENST00000520963 296 ntBASIC7.26□□□□□ -1.25
MSX1P28360 AC091096.1-201ENST00000521955 614 ntTSL 3 BASIC7.26□□□□□ -1.25
MSX1P28360 LINC02365-203ENST00000522554 802 ntTSL 2 BASIC7.26□□□□□ -1.25
MSX1P28360 KCTD21-AS1-204ENST00000528468 554 ntTSL 4 BASIC7.26□□□□□ -1.25
MSX1P28360 OR4A12P-201ENST00000530847 918 ntBASIC7.26□□□□□ -1.25
MSX1P28360 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC7.26□□□□□ -1.25
MSX1P28360 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC7.26□□□□□ -1.25
MSX1P28360 LINC02318-202ENST00000556346 715 ntTSL 3 BASIC7.26□□□□□ -1.25
MSX1P28360 AC243312.1-201ENST00000570582 275 ntBASIC7.26□□□□□ -1.25
MSX1P28360 AC068014.1-201ENST00000576836 413 ntTSL 3 BASIC7.26□□□□□ -1.25
MSX1P28360 AC015917.1-201ENST00000579654 510 ntBASIC7.26□□□□□ -1.25
MSX1P28360 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC7.26□□□□□ -1.25
MSX1P28360 STARD6-204ENST00000584040 660 ntTSL 3 BASIC7.26□□□□□ -1.25
MSX1P28360 RPL35AP25-201ENST00000584631 330 ntBASIC7.26□□□□□ -1.25
MSX1P28360 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC7.26□□□□□ -1.25
MSX1P28360 AC008770.1-206ENST00000589551 523 ntTSL 3 BASIC7.26□□□□□ -1.25
MSX1P28360 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC7.26□□□□□ -1.25
MSX1P28360 BNIP3P22-201ENST00000593399 556 ntBASIC7.26□□□□□ -1.25
MSX1P28360 AC010487.1-201ENST00000594408 1172 ntBASIC7.26□□□□□ -1.25
MSX1P28360 BNIP3P8-201ENST00000597863 560 ntBASIC7.26□□□□□ -1.25
MSX1P28360 AC007363.1-201ENST00000604736 620 ntBASIC7.26□□□□□ -1.25
MSX1P28360 HNF4A-AS1-202ENST00000609152 413 ntTSL 3 BASIC7.26□□□□□ -1.25
MSX1P28360 AC143336.1-201ENST00000614164 836 ntBASIC7.26□□□□□ -1.25
MSX1P28360 MLECP1-201ENST00000615893 709 ntBASIC7.26□□□□□ -1.25
MSX1P28360 AC008121.3-201ENST00000618726 433 ntBASIC7.26□□□□□ -1.25
MSX1P28360 RPL23AP61-201ENST00000623642 466 ntBASIC7.26□□□□□ -1.25
MSX1P28360 AC006065.6-201ENST00000625201 545 ntBASIC7.26□□□□□ -1.25
MSX1P28360 SLC22A10-201ENST00000332793 2026 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms