Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC7.57□□□□□ -1.2
HMGB1P09429 CCDC58P1-201ENST00000578567 430 ntBASIC7.57□□□□□ -1.2
HMGB1P09429 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC7.57□□□□□ -1.2
HMGB1P09429 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
HMGB1P09429 AC093225.1-201ENST00000506867 1408 ntBASIC7.57□□□□□ -1.2
HMGB1P09429 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
HMGB1P09429 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
HMGB1P09429 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC7.57□□□□□ -1.2
HMGB1P09429 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC7.57□□□□□ -1.2
HMGB1P09429 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC7.57□□□□□ -1.2
HMGB1P09429 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
HMGB1P09429 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
HMGB1P09429 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
HMGB1P09429 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
HMGB1P09429 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
HMGB1P09429 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
HMGB1P09429 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
HMGB1P09429 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC7.56□□□□□ -1.2
HMGB1P09429 AP003486.1-201ENST00000525716 3994 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 SNORD35A-201ENST00000363389 86 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 UBTFL2-201ENST00000411859 1191 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 AC010385.1-201ENST00000412374 256 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 UBE2V1P14-201ENST00000415815 558 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 AC073464.3-201ENST00000422564 712 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 AC007568.1-201ENST00000422912 471 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 AL022324.2-201ENST00000434827 780 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC7.56□□□□□ -1.2
HMGB1P09429 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC7.56□□□□□ -1.2
HMGB1P09429 AC005229.2-201ENST00000456995 399 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC7.56□□□□□ -1.2
HMGB1P09429 AC108729.2-201ENST00000476543 840 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 AC010627.1-201ENST00000503819 1294 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC7.56□□□□□ -1.2
HMGB1P09429 RN7SKP141-201ENST00000516167 338 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC7.56□□□□□ -1.2
HMGB1P09429 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC7.56□□□□□ -1.2
HMGB1P09429 AC093014.1-201ENST00000548926 724 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC7.56□□□□□ -1.2
HMGB1P09429 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC7.56□□□□□ -1.2
HMGB1P09429 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC7.56□□□□□ -1.2
HMGB1P09429 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC7.56□□□□□ -1.2
HMGB1P09429 AC135178.6-201ENST00000605314 398 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC7.56□□□□□ -1.2
HMGB1P09429 AL008723.3-201ENST00000608926 449 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC7.56□□□□□ -1.2
HMGB1P09429 AC055764.2-201ENST00000610089 670 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 AL162574.2-201ENST00000614618 657 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 AC016957.2-201ENST00000616998 848 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 MALAT1-217ENST00000620902 352 ntTSL 3 BASIC7.56□□□□□ -1.2
HMGB1P09429 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC7.56□□□□□ -1.2
HMGB1P09429 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
HMGB1P09429 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
HMGB1P09429 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
HMGB1P09429 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
HMGB1P09429 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC7.56□□□□□ -1.2
HMGB1P09429 AL161756.3-201ENST00000641216 2071 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
HMGB1P09429 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
HMGB1P09429 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
HMGB1P09429 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
HMGB1P09429 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC7.56□□□□□ -1.2
HMGB1P09429 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
HMGB1P09429 HSPD1P9-201ENST00000420325 1636 ntBASIC7.56□□□□□ -1.2
HMGB1P09429 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC7.56□□□□□ -1.2
HMGB1P09429 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HMGB1P09429 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC7.55□□□□□ -1.2
HMGB1P09429 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC7.55□□□□□ -1.2
HMGB1P09429 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC7.55□□□□□ -1.2
HMGB1P09429 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HMGB1P09429 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
HMGB1P09429 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
HMGB1P09429 BMPR1APS1-201ENST00000403332 1598 ntBASIC7.55□□□□□ -1.2
HMGB1P09429 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HMGB1P09429 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
HMGB1P09429 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC7.55□□□□□ -1.2
HMGB1P09429 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC7.55□□□□□ -1.2
HMGB1P09429 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC7.55□□□□□ -1.2
HMGB1P09429 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC7.55□□□□□ -1.2
HMGB1P09429 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HMGB1P09429 PARP4P2-201ENST00000446672 3326 ntBASIC7.55□□□□□ -1.2
HMGB1P09429 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HMGB1P09429 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC7.55□□□□□ -1.2
HMGB1P09429 CAV1-204ENST00000393470 598 ntTSL 4 BASIC7.55□□□□□ -1.2
HMGB1P09429 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC7.55□□□□□ -1.2
HMGB1P09429 GPN3P1-201ENST00000423883 535 ntBASIC7.55□□□□□ -1.2
HMGB1P09429 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HMGB1P09429 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC7.55□□□□□ -1.2
HMGB1P09429 RPL23AP12-201ENST00000467573 473 ntBASIC7.55□□□□□ -1.2
HMGB1P09429 SNRPCP3-201ENST00000474888 476 ntBASIC7.55□□□□□ -1.2
HMGB1P09429 RN7SL165P-201ENST00000477476 291 ntBASIC7.55□□□□□ -1.2
HMGB1P09429 AC008410.1-201ENST00000483777 339 ntBASIC7.55□□□□□ -1.2
HMGB1P09429 RPL29P23-201ENST00000486188 442 ntBASIC7.55□□□□□ -1.2
HMGB1P09429 AC025459.1-201ENST00000504072 156 ntBASIC7.55□□□□□ -1.2
HMGB1P09429 AC108866.1-204ENST00000508362 558 ntTSL 4 BASIC7.55□□□□□ -1.2
HMGB1P09429 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC7.55□□□□□ -1.2
HMGB1P09429 CASP1P2-201ENST00000526830 1258 ntBASIC7.55□□□□□ -1.2
HMGB1P09429 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC7.55□□□□□ -1.2
HMGB1P09429 AP003168.1-201ENST00000530091 307 ntBASIC7.55□□□□□ -1.2
HMGB1P09429 AC100768.2-201ENST00000534068 683 ntTSL 3 BASIC7.55□□□□□ -1.2
HMGB1P09429 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC7.55□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms