Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 SCARNA6-201ENST00000515982 265 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC5.67□□□□□ -1.5
HOXA3O43365 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXA3O43365 OR5AK3P-201ENST00000527486 1297 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 AC090115.2-201ENST00000548060 883 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 DUXAP1-201ENST00000556632 463 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 AADACP1-206ENST00000561502 1193 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXA3O43365 AC138207.8-204ENST00000579588 527 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXA3O43365 AC104984.3-201ENST00000581946 546 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXA3O43365 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
HOXA3O43365 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXA3O43365 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXA3O43365 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXA3O43365 AP000811.1-201ENST00000603803 651 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 AC072039.2-201ENST00000608883 439 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXA3O43365 MIR6885-201ENST00000612241 66 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 VN1R74P-201ENST00000613259 503 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 AC107075.1-201ENST00000613695 314 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 MRPL57P3-201ENST00000619218 176 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXA3O43365 CLUHP10-201ENST00000631979 980 ntBASIC5.67□□□□□ -1.5
HOXA3O43365 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
HOXA3O43365 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
HOXA3O43365 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 FYB1-210ENST00000515010 2578 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 BBOX1-204ENST00000528583 1724 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 IFNA13-202ENST00000610660 1539 ntAPPRIS P2 BASIC5.67□□□□□ -1.5
HOXA3O43365 ANGPT2-204ENST00000629816 2602 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC5.67□□□□□ -1.5
HOXA3O43365 AC244502.1-201ENST00000514473 1951 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXA3O43365 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.67□□□□□ -1.5
HOXA3O43365 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC5.67□□□□□ -1.5
HOXA3O43365 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HOXA3O43365 CLCC1-203ENST00000356970 4803 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
HOXA3O43365 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
HOXA3O43365 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXA3O43365 NCOA4P3-201ENST00000513203 1877 ntBASIC5.66□□□□□ -1.5
HOXA3O43365 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA3O43365 LINC01359-204ENST00000447748 2804 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA3O43365 ENTPD5-207ENST00000557325 3096 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA3O43365 PTK2-240ENST00000522684 4955 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HOXA3O43365 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
HOXA3O43365 NLRC4-204ENST00000404025 3581 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
HOXA3O43365 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HOXA3O43365 LINC01095-202ENST00000507726 1715 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA3O43365 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HOXA3O43365 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
HOXA3O43365 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HOXA3O43365 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
HOXA3O43365 NOX1-203ENST00000372964 661 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA3O43365 IGLV5-52-201ENST00000390289 379 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
HOXA3O43365 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA3O43365 CNN3P1-201ENST00000401596 935 ntBASIC5.66□□□□□ -1.5
HOXA3O43365 MOB4-205ENST00000409916 829 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXA3O43365 AL445213.1-201ENST00000412589 747 ntBASIC5.66□□□□□ -1.5
HOXA3O43365 MTCO3P41-201ENST00000414801 328 ntBASIC5.66□□□□□ -1.5
HOXA3O43365 AL133268.2-201ENST00000416595 430 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXA3O43365 CHCHD3P1-201ENST00000425516 676 ntBASIC5.66□□□□□ -1.5
HOXA3O43365 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXA3O43365 AL365220.1-201ENST00000432923 399 ntBASIC5.66□□□□□ -1.5
HOXA3O43365 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HOXA3O43365 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXA3O43365 LSM3P3-201ENST00000436601 306 ntBASIC5.66□□□□□ -1.5
HOXA3O43365 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXA3O43365 YWHAZP7-201ENST00000436906 631 ntBASIC5.66□□□□□ -1.5
HOXA3O43365 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA3O43365 AC092170.1-201ENST00000440211 356 ntBASIC5.66□□□□□ -1.5
HOXA3O43365 RPL12P49-201ENST00000441100 121 ntBASIC5.66□□□□□ -1.5
HOXA3O43365 TAF9P1-201ENST00000445421 515 ntBASIC5.66□□□□□ -1.5
HOXA3O43365 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXA3O43365 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.66□□□□□ -1.5
HOXA3O43365 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXA3O43365 AC002486.2-201ENST00000447806 590 ntBASIC5.66□□□□□ -1.5
HOXA3O43365 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXA3O43365 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXA3O43365 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXA3O43365 TAF9P2-201ENST00000454958 515 ntBASIC5.66□□□□□ -1.5
HOXA3O43365 AL109741.2-201ENST00000455561 343 ntBASIC5.66□□□□□ -1.5
HOXA3O43365 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC5.66□□□□□ -1.5
HOXA3O43365 RN7SKP198-201ENST00000459286 306 ntBASIC5.66□□□□□ -1.5
HOXA3O43365 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC5.66□□□□□ -1.5
HOXA3O43365 RN7SL741P-201ENST00000482473 289 ntBASIC5.66□□□□□ -1.5
HOXA3O43365 RPL5P33-201ENST00000487833 905 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 125.8 ms