Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC008627.1-201ENST00000517511 1704 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 SERPINB6-205ENST00000380539 1338 ntAPPRIS P1 TSL 3 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 ZNF484-203ENST00000395505 3960 ntAPPRIS ALT2 TSL 2 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 ENTPD5-201ENST00000334696 5842 ntAPPRIS P1 TSL 5 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 DAZ4-203ENST00000382432 2405 ntTSL 5 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 DAZ2-205ENST00000382433 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 SMCO2-201ENST00000298876 1122 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 OR1S2-201ENST00000302592 978 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 NINJ2-202ENST00000397265 793 ntAPPRIS ALT2 TSL 3 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AL121834.1-202ENST00000404494 277 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 GHRHR-204ENST00000409316 1292 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AC009228.1-201ENST00000413254 240 ntTSL 2 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AC068481.1-201ENST00000415520 530 ntTSL 4 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 SMCO2-202ENST00000416383 1272 ntAPPRIS P2 TSL 5 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AMYP1-201ENST00000440059 1023 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 SYNJ2-IT1-201ENST00000442328 599 ntTSL 3 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 IGKV1D-35-201ENST00000442736 271 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 TMEM97P1-201ENST00000452969 451 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AL645937.3-201ENST00000453647 936 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AL591866.1-201ENST00000456162 401 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 Y_RNA.635-201ENST00000459041 101 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AC244505.1-201ENST00000502642 307 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AP000916.2-201ENST00000528904 286 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AC109635.4-202ENST00000531666 412 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 OR5D15P-201ENST00000531671 942 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 SMCO2-203ENST00000535986 1096 ntAPPRIS P2 TSL 5 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 GSG1-206ENST00000537302 1028 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 PCED1B-AS1-206ENST00000550426 683 ntTSL 5 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 PCED1B-AS1-211ENST00000552990 654 ntTSL 3 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 COX5AP2-201ENST00000554418 394 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AC093525.3-201ENST00000568040 287 ntTSL 5 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 TAPT1-AS1-203ENST00000573950 510 ntTSL 3 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AC053481.3-201ENST00000577881 843 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AC073539.2-201ENST00000597113 165 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AL358335.3-201ENST00000604678 327 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AL008723.3-201ENST00000608926 449 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AC083806.3-201ENST00000614016 455 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AC243830.2-201ENST00000618067 630 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AC067931.1-201ENST00000624190 671 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AL121594.6-201ENST00000633440 261 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AC009971.1-201ENST00000634253 673 ntTSL 5 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 YAP1-203ENST00000524575 1638 ntTSL 2 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 AC079777.1-201ENST00000623836 1953 ntBASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 LINC02102-201ENST00000503989 3364 ntTSL 2 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 NLRP5-201ENST00000390649 3888 ntAPPRIS P2 TSL 1 (best) BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 NLRP5-203ENST00000621651 3885 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 BTF3L4-202ENST00000472944 2159 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 CWF19L1-201ENST00000354105 1815 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 CDC25C-201ENST00000323760 2128 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
VPS9D1Q9Y2B5 ECI2-204ENST00000380125 1405 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 PRDM10-205ENST00000526082 3308 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 NAT10-210ENST00000615292 3329 ntTSL 5 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AL356289.3-201ENST00000640049 2669 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 RNASEH2B-AS1-209ENST00000631080 1707 ntTSL 5 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 PPP6R3-218ENST00000529710 3228 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 ERG-208ENST00000417133 5023 ntAPPRIS ALT1 TSL 2 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 FBXO11-202ENST00000403359 4055 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 ZNF781-201ENST00000358582 3147 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AL512504.2-201ENST00000445455 1909 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AL391666.1-201ENST00000442570 2764 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 ADH4-209ENST00000508393 2151 ntTSL 2 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 Y_RNA.117-201ENST00000363294 101 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 SNORD86-201ENST00000391196 86 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AL161909.1-201ENST00000397390 712 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 RN7SKP59-201ENST00000410520 314 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 RN7SKP136-201ENST00000410927 300 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 RPL7P10-201ENST00000417407 739 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 NENFP1-201ENST00000419476 466 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 RPS27AP6-201ENST00000427962 448 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 BLOC1S2P1-201ENST00000428431 301 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AL441963.1-201ENST00000435137 792 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 LINC01185-201ENST00000439412 554 ntTSL 4 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 CBX1P1-201ENST00000440184 427 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AL591438.2-201ENST00000452635 691 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 RN7SL571P-201ENST00000468302 295 ntBASIC8.37□□□□□ -1.07
VPS9D1Q9Y2B5 VN1R17P-201ENST00000472048 1090 ntBASIC8.37□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms